Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01370 ATGAGTCAACGTGTCCCTAACTGCGATGTGGACGACAGCAACATTCCCACAGCAACAAAATTCCCTCTTCCCAATTTCAATTTCATATCCCATGAAGTCCCAATGTTGGGCTACCAAGTTGGGGAACTACCATGCAAAAAGGGACAACCTTCGACGTACGAAGGCAGCAACGGGAACCTAACTACATGGGACAAACCTCGTACAAGTGGTGGTACCTTGGAGTCCATAGTTAACCAACATGTCTGCGAAAACCGCTATAAATTGGTTGCTATGGACGCATTAGTGCCCTGTTCGAAACAGGGCACACGCAAGGCAGTGGAGTCGGGAAGGCTTGGTGCGTGCCGAGAAAGTAGTTCCACGCGCGTGGCGTCACGTGCCAGGGTGGCGGCGCAGGAGGAAGTGGGGAAACGCGCTGGGATGGTGGCGCGTTTGCCTACAACGCTAGAATTGAGTGGCTGCAAGGATTGGAGCGTGAGTGGTAGTGAAACTTGTCGTAGGGAATTGAGTGTGACTTTCAATTCTGCCACCATGGGTTCGCCGGAAAACACCACTAGCGCTGGCAGACAGTGCACCGGGACCACTACCAACGACGACCGTGATTCCATCAGCCACCTTATATGTCAGAGCGAGGTACCGGATGAGGATTACATGGCAGCAAAAGTTGAAAGATCATCTGGGTCCAACAAAAGAATCAAAGCTAATTCAGTTGTGCACAACCAATCTGAAAGGAGAAGAAGGGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCAAATTCCAGTAAGACCGATAAAGCTTCGATGCTAGATGAGGTGATCCAATATATGAAGCAATTGCAAGCCCAAGTGCAAATGATGAATTGGATGAAAATGTACACCACCATGATGCTGCCAATTACCATGCAGCAACAACAACAACAACTTAAAATGTCTATGATGATGGCTCAGATGGGCATGGGCATGGGGATGGGCATGGGAATGAATAAGGATATGGTTATGAATATGAACAGCATGAACATTCCCGGCATTCCCCCTATGCTCCCCTTTCCCCCCTTCATGCCTATGGTCTCATGTGGTGATCAATTACAAGGAACACCAGAGAAGTCCGTGACCATGGATGCATACAGTAAGATGGCTTCCCTGTATGATCAGCAGCTGTTTCATCCTCCAGCTTCTAGTTCCAAGAACTGA 1200 0.485 MSQRVPNCDVDDSNIPTATKFPLPNFNFISHEVPMLGYQVGELPCKKGQPSTYEGSNGNLTTWDKPRTSGGTLESIVNQHVCENRYKLVAMDALVPCSKQGTRKAVESGRLGACRESSSTRVASRARVAAQEEVGKRAGMVARLPTTLELSGCKDWSVSGSETCRRELSVTFNSATMGSPENTTSAGRQCTGTTTNDDRDSISHLICQSEVPDEDYMAAKVERSSGSNKRIKANSVVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAQVQMMNWMKMYTTMMLPITMQQQQQQLKMSMMMAQMGMGMGMGMGMNKDMVMNMNSMNIPGIPPMLPFPPFMPMVSCGDQLQGTPEKSVTMDAYSKMASLYDQQLFHPPASSSKN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01370 399 MobiDBLite consensus disorder prediction 222 245 - -
Gma01g01370 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 282 IPR011598 GO:0046983
Gma01g01370 399 SMART finulus 239 288 IPR011598 GO:0046983
Gma01g01370 399 MobiDBLite consensus disorder prediction 175 198 - -
Gma01g01370 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 302 IPR036638 GO:0046983
Gma01g01370 399 Coils Coil 239 259 - -
Gma01g01370 399 Pfam Helix-loop-helix DNA-binding domain 237 283 IPR011598 GO:0046983
Gma01g01370 399 CDD bHLH_AtPIF_like 237 296 - -
Gma01g01370 399 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 38 399 IPR031066 -
Gma01g01370 399 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 38 399 - -
Gma01g01370 399 Gene3D - 228 294 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01370 Gma-Chr1 47517563 47521524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01370 1 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.506 3.31e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g01370 HLH 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01370 - - gmx:100820284 708.753