Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01355 ATGAGTTACAGAGAAAGAAACAAAGGGAAAGGAGAAGAGAAGGAATATGAGAACAGTACTACTAGAGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTCTGATTGACCCCAAACTGTTGTTTATTGGGTCAAAAATTGGAGAGGGGGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCAGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACTTTGGAAGAAAGAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTCATGGTGATTGTTACAGAGATGTTACCCGGGTTGTCGCTGCGAAAATATCTGACCACCATACGCCCTAAACAATTGGACCCTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCGAGCCATGGATTGGTTACATGCCAACGGAATCATACACAGAGATCTGAAACCCGACAATCTGCTGCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGTTATACAGTACTGTGACATTGCGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTtgatgtctacagctttggaattgtgttgtgggagctactaacaAACCGCATGCCTTTTGAAGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATATCTCCTGACCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCTTGCTCAATGAGTTTCACTTTACACTCCAACAACCATCCCCTTCAATGCCGCTAGAACCTGAGAACGAACCTGAGGCTATAACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAAGTAAAGTTTTCGTTTATTCGGCACTTGTTTTCTTCCAAGAGGACCAAAAGCTAA 1116 0.4086 MSYRERNKGKGEEKEYENSTTRGLDSKSVSHNNGSIEEELLTIDENLLIDPKLLFIGSKIGEGAHGRVYEGRYRDQIVAIKVLHRGGTLEERVALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRKYLTTIRPKQLDPYVAIKFALDIARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRLLNEFHFTLQQPSPSMPLEPENEPEAITSNGTITDFSTRNKVKFSFIRHLFSSKRTKS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01355 371 CDD STKc_MAP3K-like 60 315 - -
Gma01g01355 371 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Gma01g01355 371 PRINTS Tyrosine kinase catalytic domain signature 168 186 IPR001245 GO:0004672|GO:0006468
Gma01g01355 371 PRINTS Tyrosine kinase catalytic domain signature 242 264 IPR001245 GO:0004672|GO:0006468
Gma01g01355 371 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Gma01g01355 371 ProSiteProfiles Protein kinase domain profile. 54 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01355 371 SMART serkin_6 54 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01355 371 PANTHER SERINE-THREONINE PROTEIN KINASE 20 339 - -
Gma01g01355 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gma01g01355 371 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 20 339 - -
Gma01g01355 371 SUPERFAMILY Protein kinase-like (PK-like) 52 334 IPR011009 -
Gma01g01355 371 MobiDBLite consensus disorder prediction 1 31 - -
Gma01g01355 371 MobiDBLite consensus disorder prediction 1 21 - -
Gma01g01355 371 Gene3D Transferase(Phosphotransferase) domain 1 137 354 - -
Gma01g01355 371 ProSitePatterns Protein kinases ATP-binding region signature. 60 81 IPR017441 GO:0005524
Gma01g01355 371 Pfam Protein tyrosine and serine/threonine kinase 56 315 IPR001245 GO:0004672|GO:0006468
Gma01g01355 371 Gene3D Phosphorylase Kinase; domain 1 42 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01355 Gma-Chr1 47198860 47204363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01355 42 368 MAP Kinase Kinase Kinase AT5G01850 72.934 0.0 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma01g01355 PK_Tyr_Ser-Thr 2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01355 - - gmx:100816708 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01355 01 47198860 47204363 Gma01g01355 01 47198860 47204363 ECH
Gma09g02519 09 50460093 50464057 Gma01g01355 01 47198860 47204363 PCT
Gma01g01355 01 47198860 47204363 Gma09g02519 09 50460093 50464057 PCT