Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01351 ATGTACAAGGGAAGATTAGGAGGCAAGGCTCAGCTTGGATATGTTGAAACTGACCCTTTGGGTCGATATGGACGTTTCAGGGACATTCTAGGCAAAGGAGCAGTGAAGGTAGTGTATAGGGCCTTTGATGAGGTCCTAGGAATAGAGGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTGTTTCATTCACCAGATCTACTTCCGAGGCTTTATTCAGAGGTTCATCTCCTCAAGAACTTGGAACATGACTCCATCATGACCTTCCATGATTCTTGGATTGATGTCAACTGTAGAACCTTCAACTTCATCACCGAATTGTTCACATCTGGCACCCTACGAGAGTATAGAAAGAAGTACCAGCGAGTAGATATCAGAGCAGTGAAGAATTGGGCACGCCAGATTCTAAGTGGCTTGGAGTATTTGCACAGCCATGATCCTCCTGTGATACATAGAGACCTCAAATGTGACAATATCTTCATCAATGGCCATCTGGGGCAGGTCAAGATTGGTGACTTGGGCCTTGCAGCCATTCTCCGTGGCTCCCAACATGCACACAGTGTCATAGGTACACCAGAATTTATGGCACCTGAATTGTATGAAGAGGAATACAATGAGCTGGTCGACATATACTCCTTTGGGATGTGCATGATAGAAATTTTTACTTCTGAGTTCCCGTACAGCGAGTGCTCTAACCCTGCTCAGATATACAAGAAAGTTACTTCGGGGAAGCTACCAGAAGCCTATTACAGAATCCATGACTTGGAAGCCCAAAGATTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGTCAGCAAAGGAGCTCTTGTTGGACCCATTTTTAGCCAAGGAACAACTAGACTCTCCACTTCCTAGCCCAACATTACCTAAAAAACAAGCCCCCACACTCAATTTCACTGCATCACTTGCCAAAGAGTTATCTCAGCCAAAGAGTAACCAAACAAAGGACTCACACATGACAATCACCGGATCAATAAATGAAGAGGATGACACGGTTTTCCTGAAAGTACAAATTTCTAACAAAGATGGGCAAAAGAGAAACATTTTCTTTCCATTTGACACCATATACGACACTGCCATTGATGTGGCAATGGAGATGGTTAAAGAACTGGAGATTAGTGACTTGGAACCATTGGAGATTGCTAAAATGATTGAGGAGGAGATATCAGCTTTGGTCCCTACATGGAGGGATTGGGGCAGTGCTGAGTATCAAAAGCAGCATAGTTTTAGCTATGAAGAAGAGTATGACATGAGTAACCACCACCCTTTCTTCTCAACATCTTCTCGCTCTTCCTCTCATGCTTCTCTTCCAGTGTTTGGTTCTTCCTACAAGAATAATTTCCACCATCGTGGGAATCATTACCCTTTTGCTCAAGATTGGCCTCAAGATGAACTATTTATGAATGATGATGCGAGCTCTCAAAGCTCAATGAACTCCTTCAAGTGTTTCAATTTCAATTGCTGTGACCCTGGCAATGAAGATGAGCATGATCCAACTCTAGTACTAGGAGCAGAACACCTTTACTACACCCCAAAAGGAAACGAAAAGTGCATAAGATTTTGTCCTAGAGAAGAAGTGATGGATGCTGATTTCACCAAACAGTTATGCAACATGAGAATGGATTCTCACAGGTGTCATGGAATGCACAGGCTAACCAGGATCCGTTCCTTCGTGGACCTGAGGAGACAACAACTGCAACGATCACTGATGGAGGAGATTCACAAGAGGAGAATGTTCAAGACGGTTGGTGCCGTTGAGAACATTGGGTTTCAGAATCCAGAAGGAGACGGATGTTTTTCTTATTGA 1830 0.4366 MYKGRLGGKAQLGYVETDPLGRYGRFRDILGKGAVKVVYRAFDEVLGIEVAWNQVKLGDVFHSPDLLPRLYSEVHLLKNLEHDSIMTFHDSWIDVNCRTFNFITELFTSGTLREYRKKYQRVDIRAVKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIEIFTSEFPYSECSNPAQIYKKVTSGKLPEAYYRIHDLEAQRFVGKCLANVSERLSAKELLLDPFLAKEQLDSPLPSPTLPKKQAPTLNFTASLAKELSQPKSNQTKDSHMTITGSINEEDDTVFLKVQISNKDGQKRNIFFPFDTIYDTAIDVAMEMVKELEISDLEPLEIAKMIEEEISALVPTWRDWGSAEYQKQHSFSYEEEYDMSNHHPFFSTSSRSSSHASLPVFGSSYKNNFHHRGNHYPFAQDWPQDELFMNDDASSQSSMNSFKCFNFNCCDPGNEDEHDPTLVLGAEHLYYTPKGNEKCIRFCPREEVMDADFTKQLCNMRMDSHRCHGMHRLTRIRSFVDLRRQQLQRSLMEEIHKRRMFKTVGAVENIGFQNPEGDGCFSY 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01351 609 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01351 609 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Gma01g01351 609 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01351 609 CDD STKc_WNK 22 282 - -
Gma01g01351 609 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Gma01g01351 609 PANTHER WNK KINASE 1 602 - -
Gma01g01351 609 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01351 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 602 - -
Gma01g01351 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gma01g01351 609 SUPERFAMILY Protein kinase-like (PK-like) 26 283 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01351 Gma-Chr1 47062686 47069878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01351 12 424 MAP Kinase Kinase Kinase AT3G51630 67.633 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gma01g01351 Pkinase 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01351 K08867 - gmx:100816187 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01351 01 47062686 47069878 Gma01g01351 01 47062686 47069878 ECH
Gma09g02522 09 50494473 50499215 Gma01g01351 01 47062686 47069878 PCT
Gma01g01351 01 47062686 47069878 Gma09g02522 09 50494473 50499215 PCT