Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01349 ATGGCGATTTCTCCTGAAACGTTCCCAACCCGAAAACGACGACCCGAAAACATGGCGTCGTTTATGTCTCCGAAGATAAACGACCTTAACGTTTTGTGCTCCTTGCTTCAACTCACGGACCAGATATGTTCCCTAAACCTCACAACCACCCTCTTGAACCGTGTTTCCTCTTCCACCATCCGCAAAACGCAGCTCCTAGGTGTCGTTTTCGAGGAGCTCGTTCGCGTTTCAAATCTGAACTCCAATTCTTCCGTTCTATTCCTCTGCCTCGAGGAAATGTACATCGTTCTGCACAATATCAAAATCCTAATCGAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAGATCGAAACCGTGGCTGATAATTTCCACAGGCTCACCGGAGAACTCTCCACGCTCCTCGACGTGCTCCCTCTCCAAGAGCTCGACCTAAACGACGACGTTAGGGAACTCGCTCTCCTCGTCAGAAAACAGGGCTCGGAAGCGAAGGCGTTCATCGGAGCCGAACAAATCAGCCTCCGGAACGACGTCGTTTTCGTGCTCGACCGGATCAAGAACGAGATCGTCCCCGATCAAGCGCATCTAGCATCGATCTTCGAGAAGTTGGAGATTCGCGACGCGTCGAGCTGCAGAGCGGAGATCGGGAGCCTCGAAGAGGAGATTCACAACCGTAGCGAAGAACAACCGAAAACGGATCTCGTTGCTTTGATCGGCCTCGTCCGTTTCGCGAAGTGCGTTCTTTACGGCGCGTCAACGCCGTCGCAGAAGACCGTCACTATGCGGCGGAATCAGTCGTTGGAGCTAACAATTCCTGCGGATTACCGGTGCCCGATAAGCCTAGAGCTCATGCGCGATCCCGTCGTGGTGGCGACAGGACAGACGTACGATCGTGCATCGATCAAGCTCTGGATGGATTCAGGACACAACACGTGTCCAAAAACGGGTCAAACGCTATCACACACCGAGCTAATCCCCAATCGCGTGCTGCGGAACATGATAGCAGCGTGGTGCCGCGAGCAGAGAATCCCCTTCAAAGTAGAAACGGTTACAGGGAAACACAACAGCGGAGTTACCAACAAAGCCGCATTAGAAGCCACGCGAATGATGGTGTCATTTTTGGTCAACAAGCTCAAGGGAAATGGACATGGAAAGGAAGATAATGATAACGTTAACGTTCCTTTGAGTGTTGAAGACGCAAACGGCGTCGTTTACGAGCTTCGGGTGTTGGCGAAGACAGATTCGGGTAGCCGAGCCTGTATAGCCGAAGCGGGAGCGATTCCACTATTGGTTCGGTTCCTTAATGCGGAGGAGAATCCGAGCCTGCAGGTTAACGCCGTGACGACGATTTTGAACTTGTCTATATTGGAAGCGAACAAGACTAAGATAATGGAGACTGACGGCGCGTTAAACGGCGTCGCAGAGGTTTTGATTTCGGGTGCCACGTGGGAGGCGAAGGCGAACGCGGCGGCGACGGTGTTTAGCTTGTCGGGTGTGGCGGCGCACAGGAGGAGGCTGGGGAGGAAGACACGTGTCGTGAGCGGGTTGGTGGGGTTGGCGAAGACTGGGCCAGAGGGGGCAAGGAGGGACGCGCTGGCAGCAGTGTTGAATTTGGCgGCGGATAGGGAGACGGTGGCGAGGTTGGTGGAGGGGGGTGTGGTCGGGATGGCGGCAGAGGTGATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTGGAGGCGGTGGTGAAGAGGGGTGGGTTGGTGGCGGTGGCGGCGGCGTATGCCGGGATTAAGAGGCTAGGGGCGGTTCTGAGGGAGGGGTCAGAGAGGGCGAGGGAGAGCGCGGCGGCGACGCTGGTGACAATGTGTCGGAAGGGGGGGTCGGAGGTTGTGGCGGAGCTGGCGGCGGTGCCCGGCGTGGAGAGGGTTATTTGGGAGCTCATGGCAGTTGGGAGTGTCAGGGGGCGGCGGAAGGCGGCGACGTTGTTGAGGATTATGCGGCGGTGGGCGGCCGGGATCGATGGTGGAGAGAATGAAGGGTTCACGACAACTACTCCTACCATGGTTGCTTCCTCAACTACTATGGTTGTTCCAACCACCACCTCTTCGTTAGCACAGTAA 2109 0.5586 MAISPETFPTRKRRPENMASFMSPKINDLNVLCSLLQLTDQICSLNLTTTLLNRVSSSTIRKTQLLGVVFEELVRVSNLNSNSSVLFLCLEEMYIVLHNIKILIEDFSNGSKFNLLMQIETVADNFHRLTGELSTLLDVLPLQELDLNDDVRELALLVRKQGSEAKAFIGAEQISLRNDVVFVLDRIKNEIVPDQAHLASIFEKLEIRDASSCRAEIGSLEEEIHNRSEEQPKTDLVALIGLVRFAKCVLYGASTPSQKTVTMRRNQSLELTIPADYRCPISLELMRDPVVVATGQTYDRASIKLWMDSGHNTCPKTGQTLSHTELIPNRVLRNMIAAWCREQRIPFKVETVTGKHNSGVTNKAALEATRMMVSFLVNKLKGNGHGKEDNDNVNVPLSVEDANGVVYELRVLAKTDSGSRACIAEAGAIPLLVRFLNAEENPSLQVNAVTTILNLSILEANKTKIMETDGALNGVAEVLISGATWEAKANAAATVFSLSGVAAHRRRLGRKTRVVSGLVGLAKTGPEGARRDALAAVLNLAADRETVARLVEGGVVGMAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPGVERVIWELMAVGSVRGRRKAATLLRIMRRWAAGIDGGENEGFTTTTPTMVASSTTMVVPTTTSSLAQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01349 702 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Gma01g01349 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 470 IPR000225 GO:0005515
Gma01g01349 702 SUPERFAMILY RING/U-box 268 345 - -
Gma01g01349 702 Gene3D - 361 666 IPR011989 -
Gma01g01349 702 SUPERFAMILY ARM repeat 398 662 IPR016024 -
Gma01g01349 702 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515
Gma01g01349 702 SMART arm_5 416 457 IPR000225 GO:0005515
Gma01g01349 702 PANTHER U BOX DOMAIN-CONTAINING 13 681 - -
Gma01g01349 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 351 IPR013083 -
Gma01g01349 702 Pfam U-box domain 273 344 IPR003613 GO:0004842|GO:0016567
Gma01g01349 702 CDD RING-Ubox_PUB 277 319 IPR045210 -
Gma01g01349 702 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 13 681 - -
Gma01g01349 702 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01349 Gma-Chr1 47003783 47005959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01349 9 697 U-box Gene Family AT5G01830 55.636 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01349 - - gmx:100784832 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01349 01 47003783 47005959 Gma01g01349 01 47003783 47005959 ECH