Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01329 ATGGATTCTAGGCGGCGTGGTAAAAACGCATCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCAGAGCTAGGAACCGCGGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGTCCCGGTATGCTTGGGGCAATACTCGATGCATTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAAGTCAAGAGAACGAAAGCATTGACGCGCAAGTGGTAAAGCAAGCAGTGCTTCAAGCAATCCAAAACATGGATTAA 453 0.4525 MDSRRRGKNASMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLGAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAIQNMD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01329 150 Gene3D - 1 67 IPR036638 GO:0046983
Gma01g01329 150 Coils Coil 34 61 - -
Gma01g01329 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
Gma01g01329 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 62 IPR036638 GO:0046983
Gma01g01329 150 CDD ACT_UUR-ACR-like 90 146 - -
Gma01g01329 150 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 150 - -
Gma01g01329 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01329 Gma-Chr1 46582158 46584335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01329 4 63 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 40.984 5.53e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01329 - - gmx:100500546 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01329 01 46582158 46584335 Gma18g00205 18 1651755 1653216 ECH
Gma01g01329 01 46582158 46584335 Gma11g02370 11 39083596 39085073 ECH
Gma01g01329 01 46582158 46584335 Gma02g02448 02 50603940 50605465 ECH
Gma01g01329 01 46582158 46584335 Gma14g00453 14 4342475 4344045 ECH
Gma01g01329 01 46582158 46584335 Gma01g01329 01 46582158 46584335 ECH
Gma01g01329 01 46582158 46584335 Gma11g01817 11 20827860 20831725 ECH