Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01313 ATGTCTTTCAGTTTCACTGACCTTCTTTTTACCAACAACAATAACATGAACAGGGATGATGATCCCTTTGGACTTGAGTTTGCTAATAACTTCAAGTCAGCTTCACTGCCTCTCTCTCCTTCTTCAATCTACCCTTCTTATGCTGAGTTCCCTCCTGGTTTTGCCCCAACCACACAGTCATTGAATCCACACCACTTTTTTTCTTCTCAAAATgTTCCTGCATCTTACACAACTGAGCCATCTTCTAGCATGAGTTTCAACATGAGAAACAGTTCAACTATGGGTCAACATGGAAACAAGGAGGAAGAGAGAAACTACTCTGACCACTCTTTCCAAACAAAAGCAAACCACGTGCCTCTCTTTCAATCTTCCACAAGCATATTTCAAGTGGAGCCACAAAAGAAACAGGACACAATGATATTCAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGAAACAAAATCTGAATATCCATCCACTCAGGGCTTCTCAACAGCATTAGCCTCAATCAAACATGAAATACAAAGCAATTCTGCTCCTGGATCTGTTCAATTTAACTCCATTGCTCCTAAGTCTATTAGGGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGCGAAAATCCACGTAGTTATTACAAGTGCACGCACCCGAGTTGCCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATATCACTGAAATAGTATACAAGGGAAGTCACAATCATCCCAAGCCACATGGTAGAAAAAATGGTTCTCAATCAATTCATCAAACTTCTTCACCCTGCACCAACTCGGGGATTTCTGATCAATCTGTAGGAGATGAAGATCTAGAGCAAATATCACAGACTAGTTATTCTGGAGGGGGTGATGATGACCTTGGAAATGAGGCCAAAAGATGGAAGGGGGAGAATGAAAATGATGGCCATTCCTATTCTTCTGCTGGGAGTAGAACTGTTAAGGAACCTAAAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTAGCCCCGGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTTCACATGACATGAAAGCTGTGATTACGACTTATGAAGGGAAACATATCCATGATGTACCATTAGGACGAGGAAACTCAAGCTATAGCATGAACAGAAATTCTCTAAACAACACCTCCAACAACACCAACACCAGCAATGTAACAGCTCCTGCTCCTATAAGGCCCTCAGCACTGACTAACTATTCTAACTCAGCAAGTTTCACAAACTCACTTCATGACACAAAGCAACCAACATCTGCAGGTCAAGAACCTTTTCCAATGGACTTGCTGCTGAGCCCTGGAAGCATCGGATTTTCGGCTAATGACTCATTCCTTCAGTCTTTTTTGTCAAAGAACTTTTAA 1518 0.4144 MSFSFTDLLFTNNNNMNRDDDPFGLEFANNFKSASLPLSPSSIYPSYAEFPPGFAPTTQSLNPHHFFSSQNVPASYTTEPSSSMSFNMRNSSTMGQHGNKEEERNYSDHSFQTKANHVPLFQSSTSIFQVEPQKKQDTMIFNEAAKQTDFSSERTETKSEYPSTQGFSTALASIKHEIQSNSAPGSVQFNSIAPKSIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTHPSCPTKKKVERSLEGHITEIVYKGSHNHPKPHGRKNGSQSIHQTSSPCTNSGISDQSVGDEDLEQISQTSYSGGGDDDLGNEAKRWKGENENDGHSYSSAGSRTVKEPKVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERASHDMKAVITTYEGKHIHDVPLGRGNSSYSMNRNSLNNTSNNTNTSNVTAPAPIRPSALTNYSNSASFTNSLHDTKQPTSAGQEPFPMDLLLSPGSIGFSANDSFLQSFLSKNF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01313 505 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 SMART WRKY_cls 352 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 MobiDBLite consensus disorder prediction 78 95 - -
Gma01g01313 505 MobiDBLite consensus disorder prediction 427 473 - -
Gma01g01313 505 ProSiteProfiles WRKY domain profile. 347 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 MobiDBLite consensus disorder prediction 267 306 - -
Gma01g01313 505 MobiDBLite consensus disorder prediction 199 218 - -
Gma01g01313 505 SUPERFAMILY WRKY DNA-binding domain 199 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 MobiDBLite consensus disorder prediction 324 339 - -
Gma01g01313 505 MobiDBLite consensus disorder prediction 78 108 - -
Gma01g01313 505 Gene3D WRKY domain 189 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 Gene3D WRKY domain 339 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 503 IPR044810 GO:0003700
Gma01g01313 505 MobiDBLite consensus disorder prediction 427 477 - -
Gma01g01313 505 MobiDBLite consensus disorder prediction 253 339 - -
Gma01g01313 505 SUPERFAMILY WRKY DNA-binding domain 344 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 MobiDBLite consensus disorder prediction 309 323 - -
Gma01g01313 505 ProSiteProfiles WRKY domain profile. 198 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 MobiDBLite consensus disorder prediction 199 224 - -
Gma01g01313 505 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 12 503 - -
Gma01g01313 505 Pfam WRKY DNA -binding domain 353 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma01g01313 505 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01313 Gma-Chr1 46176962 46179947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01313 198 482 WRKY Transcription Factor Family AT2G38470 54.717 7.19e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma01g01313 WRKY 4.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01313 K13424 - gmx:100127367 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01313 01 46176962 46179947 Gma01g01313 01 46176962 46179947 ECH
Gma18g01927 18 52325322 52329068 Gma01g01313 01 46176962 46179947 PCT
Gma09g02558 09 50881369 50883871 Gma01g01313 01 46176962 46179947 PCT
Gma01g01313 01 46176962 46179947 Gma18g01927 18 52325322 52329068 PCT
Gma01g01313 01 46176962 46179947 Gma09g02558 09 50881369 50883871 PCT