Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01308 ATGGGAGGGTGTTGCAGTTGTCATGTTTCATTTGTAGGCAAGGTGCATGATGTGGAATGTGAATGTAACCATAATAATGATGATGGTGCATGTGAACATGGTGGGGCAAGGGTCATGTTAAAAGGATCCTCTACGTTTGTGTCAATGTACAGCCAAAAGGGTTCAAAAGGAGTTAATCAAGATGCATTAACAGTTTGGCAGGACTTCACTGGAAAAAAGGACATGATTTTTTGTGGGGTGTTTGATGGTCATGGtcctctaggacacaagttatcacagtgcatacgtgacaatctacccgcaaaactgtcagcatcaatcaaacagtcacaagaaaaagccatgaaacactatgacgctaatgctacaaatggtggcagtcatagtgatgactatgttgaggataaccaaaatatgtcctttccttcatgggagggaacctttatgaggtgcttcagtgaaatagatgaaaagtttgctaagaacatagacactgacggatttcggggcggtagcactgctgtaactgtaatcaaacagggtgaccaattaataattggcaatgtgggggattctcgtgcagttctttgcagaagagcacctgacaatcgtcttattcctgttcaacttactgttgacttgactccagatattccaagagaagctttgaggatcattaattgtggaggtagaatttttgctacagaagaagatccaagtgtaaacagagtatggatgcctaaaggggactgccctggactggctatggcaagagcctttggaaatttttgcttaaaagactatggtgtcacctcgatcccagatgtatcatacagaaaacttaccaagcaggatgagtttgtggttttggcttctgatggg 882 0.1202 MGGCCSCHVSFVGKVHDVECECNHNNDDGACEHGGARVMLKGSSTFVSMYSQKGSKGVNQDALTVWQDFTGKKDMIFCGVFDGHGPLGHKLSQCIRDNLPAKLSASIKQSQEKAMKHYDANATNGGSHSDDYVEDNQNMSFPSWEGTFMRCFSEIDEKFAKNIDTDGFRGGSTAVTVIKQGDQLIIGNVGDSRAVLCRRAPDNRLIPVQLTVDLTPDIPREALRIINCGGRIFATEEDPSVNRVWMPKGDCPGLAMARAFGNFCLKDYGVTSIPDVSYRKLTKQDEFVVLASDG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01308 294 SUPERFAMILY PP2C-like 41 294 IPR036457 -
Gma01g01308 294 SMART PP2C_4 36 294 IPR001932 -
Gma01g01308 294 PANTHER ALPHABET, ISOFORM E-RELATED 1 294 - -
Gma01g01308 294 Gene3D - 38 294 IPR036457 -
Gma01g01308 294 Pfam Protein phosphatase 2C 76 294 IPR001932 -
Gma01g01308 294 CDD PP2Cc 46 294 IPR001932 -
Gma01g01308 294 ProSiteProfiles PPM-type phosphatase domain profile. 46 294 IPR001932 -
Gma01g01308 294 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01308 Gma-Chr1 46096277 46098768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01308 20 294 PP2C-type Phosphatase Gene Family AT5G36250 46.758 1.03e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01308 - - gmx:100809068 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01920 18 52267937 52273809 Gma01g01308 01 46096277 46098768 PCT
Gma09g02564 09 50915322 50919238 Gma01g01308 01 46096277 46098768 PCT
Gma01g01308 01 46096277 46098768 Gma18g01920 18 52267937 52273809 PCT
Gma01g01308 01 46096277 46098768 Gma09g02564 09 50915322 50919238 PCT