Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01269 ATGGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTGCACCCAAGCCATCATCTGGACCCCACAAGTCCCGGGAGTGTCTTCCTCTGATCCTCATCCTACGAAACAGGCTAAAGTATGCTCTAACATATAGAGAAGTTATTGCCATCTTGATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAATGAAAATTTCCGTCTACTGTATGACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAGTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCCTATTTAAACACATACGATGGGCGCACCATCCGCTATCCTGACCCACTAATCAAGGCCAATGACACCATCAAGCTGGACCTTGAAAGCAACAAGATCACTGATTTCATCAAATTTGATGTGGGGAATGTTGTTATGGTCACTGGTGGAAGGAACAGAGGCCGTGTCGGTGTCATCAAGAACAGAGAGAAACACAAGGGAAGTTTTGAGACCATCCATGTCCAGGATGCAACTGGTCACGAATTTGCAACTCGTATGGGTAATGTCTTCATCATTGGCAAAGGGACAAAACCTTGGGTGTCTCTTCCCAAAGGCAAGGGTATCAAGTTGTCTATCATTGAGGAGGCTAGAAAGAGGCTTGCTGCACAAAATGAAACAGTTGCCTAA 795 0.4553 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFIIGKGTKPWVSLPKGKGIKLSIIEEARKRLAAQNETVA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01269 264 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Gma01g01269 264 CDD KOW_RPS4 175 229 IPR041982 -
Gma01g01269 264 Pfam S4 domain 47 90 IPR002942 GO:0003723
Gma01g01269 264 Pfam Ribosomal family S4e 95 169 IPR013845 -
Gma01g01269 264 Pfam KOW motif 177 210 IPR005824 -
Gma01g01269 264 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma01g01269 264 SMART kow_9 174 201 IPR005824 -
Gma01g01269 264 PANTHER 40S RIBOSOMAL PROTEIN S4 2 220 - -
Gma01g01269 264 PANTHER 40S RIBOSOMAL PROTEIN S4 221 264 - -
Gma01g01269 264 Gene3D - 175 245 IPR014722 -
Gma01g01269 264 SMART s4_6 42 106 IPR002942 GO:0003723
Gma01g01269 264 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma01g01269 264 CDD S4 51 112 - -
Gma01g01269 264 Pfam 40S ribosomal protein S4 C-terminus 212 259 IPR032277 -
Gma01g01269 264 Gene3D - 122 172 IPR038237 -
Gma01g01269 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma01g01269 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 264 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma01g01269 264 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Gma01g01269 264 ProSiteProfiles S4 RNA-binding domain profile. 42 104 - -
Gma01g01269 264 Gene3D - 1 117 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01269 Gma-Chr1 45044172 45046994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01269 1 260 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.923 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01269 K02987 - gmx:100801792 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01269 01 45044172 45046994 Gma02g02472 02 50826027 50828780 ECH
Gma01g01269 01 45044172 45046994 Gma14g00478 14 4551827 4554535 ECH
Gma01g01269 01 45044172 45046994 Gma01g01269 01 45044172 45046994 ECH