Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01196 AGAAATTTGGTGGCTAAGGATTTCAATATTGCAAAAGAAGCAGGGGGTGTTGGTAAGGCAGTAATTAAAAATTTCACAGTTGTTGTGACTAGTAACGCCTTGGAGATTCGGTTATATTGGGCTGGGAAAGGAACCACTTCTATTCCATTTAGATCAGTTTATGGTCCTCTTATATCAGCTATATCTGTTGATCCTAACTTTATACCCCCATCAGAAAGTGGTAGTAGCAGCATATCCATAATAAGGGTTGTGGTTGCAGTTGTGGTTGCTGGAGCAATTATCATCTTGATATTTGGTATATTGTGGTGGAAGCGCTTTTTAGGATGGGAAAGATCAGTGGGCAGAGAACTGAAGGGTTTAGAATCACAAACTAGTTTATTTACCCTACGACAAATCAAGGCAGCAACAAATAACTTTGACAAATCCTTGAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTACTATCGGATGGCACTGTAGTAGCAGTTAAGCAGCTTTCTGCTAGGTCAAGGCAAGGGAGTCGGGAATTTGTAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCTTGTTTAGTTAAGCTCTACGGCTGTTGTATGGAAGAGGATCAATTGTTACTGATTTATGAATACATGGAAAACAATAGTCTTGCTCATGCTTTATTTGGTAATTCCAAAAATGATGAATCTGAGAAATGTCAATTGAGATTGGATTGGCAAACAAGGCATAGGATTTGTGTTGGTATCGCTAAAGGTTTGGCTTACCTTCATGAAGAGTCCAAACTGAAGATTGTTCATAGGGACATCAAGGCCAATAATGTGTTGCTGGATAAAGATCTCAACCCCAAGATATCTGATTTTGGATTGGCAAAGCTTAATGATGAGGACAAAACCCATTTGAGCACCAGAATAGCTGGCACTTATGGGTACATTGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGGATGAGCAACACCATTAGCCAGCCTACGGAAGAATGTTTCTCTCTCATTGATAGGGTACATCTCTTGAAAGAAAACGGTAATCTAATGGAGATTGTGGATAAGAGGTTGGGTGAACACTTCAACAAAACGGAGGCAATGATGATGATCAATGTAGCCCTTTTATGCACCAAAGTCTCTCTAGCACTCAGGCCCACCATGTCTTTAGTGGTAAGCATGCTTGAAGGGAGAACACGTATTCAAGAGGTGGTGTTAGACAAAAGAGAGGTATTGGATGATGACAAATTTGAGATAATGCAACAGTATTATCAACACAGAGGAGAAAATAACATAATTGAGTCTCAGAACCTAAGTTACCCTACGGGGGAATCTTCTAAACTTTTCGCTGATACAAGTTCTTCTGGTGAGCAAATTGAAAGTTAG 1449 0.3996 RNLVAKDFNIAKEAGGVGKAVIKNFTVVVTSNALEIRLYWAGKGTTSIPFRSVYGPLISAISVDPNFIPPSESGSSSISIIRVVVAVVVAGAIIILIFGILWWKRFLGWERSVGRELKGLESQTSLFTLRQIKAATNNFDKSLKIGEGGFGPVYKGVLSDGTVVAVKQLSARSRQGSREFVNEIGLISALQHPCLVKLYGCCMEEDQLLLIYEYMENNSLAHALFGNSKNDESEKCQLRLDWQTRHRICVGIAKGLAYLHEESKLKIVHRDIKANNVLLDKDLNPKISDFGLAKLNDEDKTHLSTRIAGTYGYIAPEYAMHGYLTDKADVYSFGIVALEIVSGMSNTISQPTEECFSLIDRVHLLKENGNLMEIVDKRLGEHFNKTEAMMMINVALLCTKVSLALRPTMSLVVSMLEGRTRIQEVVLDKREVLDDDKFEIMQQYYQHRGENNIIESQNLSYPTGESSKLFADTSSSGEQIES 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01196 482 CDD STKc_IRAK 145 418 - -
Gma01g01196 482 SMART serkin_6 139 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01196 482 ProSiteProfiles Protein kinase domain profile. 139 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g01196 482 Pfam Protein tyrosine and serine/threonine kinase 143 371 IPR001245 GO:0004672|GO:0006468
Gma01g01196 482 Gene3D Transferase(Phosphotransferase) domain 1 215 440 - -
Gma01g01196 482 Pfam Malectin domain 2 61 IPR021720 -
Gma01g01196 482 Gene3D - 1 65 - -
Gma01g01196 482 SUPERFAMILY Protein kinase-like (PK-like) 122 417 IPR011009 -
Gma01g01196 482 Gene3D Phosphorylase Kinase; domain 1 109 214 - -
Gma01g01196 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Gma01g01196 482 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 91 467 - -
Gma01g01196 482 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 91 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01196 Gma-Chr1 42390326 42457381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01196 3 445 Receptor kinase-like Gene Family AT1G07650 60.271 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma01g01196 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01196 - - gmx:100801071 882.478