Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01187 ATGCATGTTTCCGGTCTTATTTTTAAACTAGTTTTGAGGAACAATGCTCTAACTACTTTGCGTGGGATTGAGAATTTGAAGTCACTTGAAGGACTTGATGTTTCCTACAATATTATTTCCAATTTTTCAAAGCTAGAATTTTTTGCGGGGCTTCCATATCTTCAAAGCTTGTGGTTGGAAGGAAATCCTTTGTGTTGTGATCGATGGTATAGAGCACAAGTATTCAGCTTCTTCTCCTACCCAGAAAGGTTGAAGTTAGATGACAAAGAAATTAACACTTGTGATTTTTGGAAGAGACAAATAATTATTGCCAGTATGCATAAGCGACCTGCCAGTTTTGGGATTTATGTGCCTACAAAGGATGAAGTTGTCATTGAAGGCCCCATGGCAACCAATCCTGGAAATCATGCCCCTTCAAATGGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGATGTGCTGCACAAGAATCAGGGGGTATTGGCCGGCCAGCTGGTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGGCATGTAGCTGTAGTTTCATTGCTGCTATCCTCTTTGGTCCCTAAACTGGTGGATCCTGCTGTTGATCCTGATGCCTACAGGAATGTCGTCTCTACCGTTACCTTATTTGCTGGAATCTTTCAAGCTGCATTTGGTATTTTCAGGCGCAACCATCATGATTGGTTTTTCATTCAGGAGTGTTCACCAGGAGGTGATTATATTTGGAATGGGCAACGAGTAATGTTGACAGCCGATCTTGGGGTTAGATTGGAAGATATCAAGCATTGCCTCGGAGGAACGATCATCGTCGTGTTGGAGAGCGAAAACAAAACATACACAAGAAACCCTTCATGGACATACAAAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAATTTAA 1074 0.432 MHVSGLIFKLVLRNNALTTLRGIENLKSLEGLDVSYNIISNFSKLEFFAGLPYLQSLWLEGNPLCCDRWYRAQVFSFFSYPERLKLDDKEINTCDFWKRQIIIASMHKRPASFGIYVPTKDEVVIEGPMATNPGNHAPSNGCSNVNFAFRGACNRCGTARPAGASGISGAGGRGKGCAAQESGGIGRPAGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRHVAVVSLLLSSLVPKLVDPAVDPDAYRNVVSTVTLFAGIFQAAFGIFRRNHHDWFFIQECSPGGDYIWNGQRVMLTADLGVRLEDIKHCLGGTIIVVLESENKTYTRNPSWTYKVRPRDLGKMFSI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01187 357 ProSiteProfiles Zinc finger RanBP2 type profile. 195 224 IPR001876 -
Gma01g01187 357 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 130 - -
Gma01g01187 357 ProSitePatterns Zinc finger RanBP2-type signature. 199 218 IPR001876 -
Gma01g01187 357 Gene3D - 119 164 - -
Gma01g01187 357 Gene3D - 194 225 - -
Gma01g01187 357 SUPERFAMILY Ran binding protein zinc finger-like 189 225 IPR036443 -
Gma01g01187 357 SUPERFAMILY Ran binding protein zinc finger-like 138 163 IPR036443 -
Gma01g01187 357 ProSiteProfiles Leucine-rich repeat profile. 28 49 IPR001611 GO:0005515
Gma01g01187 357 SUPERFAMILY L domain-like 7 92 - -
Gma01g01187 357 SMART zf_4 197 221 IPR001876 -
Gma01g01187 357 SMART zf_4 140 159 IPR001876 -
Gma01g01187 357 PANTHER NISCHARIN RELATED 3 130 - -
Gma01g01187 357 Pfam Zn-finger in Ran binding protein and others 198 224 IPR001876 -
Gma01g01187 357 Gene3D Ribonuclease Inhibitor 6 95 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01187 Gma-Chr1 42144781 42150391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01187 227 279 Inorganic Solute Cotransporters AT1G77990 64.151 1.83e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01187 - - gmx:100795227 253.062