Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01171 ATGAAGACTGCAAAGGGCAAGGGAGCAGCGAGGCCCTCAAAAGAATCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGCGGAAGGCTTCTGGTAAGCCTGAGAAAAGCAGAGCACCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCCAACAAGCCTAAAAGACCACCGAGTGCTTTCTTCGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTCTCGTGAAGGCTGTATCAGTTGTTGGAAAAGCTGGAGGAGAGAAATGGAAATCCCTGTCCAGTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATCAAAGCTTATGAGAAAAAGCAGGCAAGCTCTGCAGATGATGATGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGCCAGTGGAGAGGAGGACCACCAAgaggacgaggatgatgaggaggaagaggacgatgaAGATGATGACTGA 510 0.4333 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEVNDEDDASGEEDHQEDEDDEEEEDDEDDD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01171 169 MobiDBLite consensus disorder prediction 1 57 - -
Gma01g01171 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 53 122 IPR009071 -
Gma01g01171 169 MobiDBLite consensus disorder prediction 122 169 - -
Gma01g01171 169 MobiDBLite consensus disorder prediction 8 54 - -
Gma01g01171 169 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 161 IPR031061 -
Gma01g01171 169 Gene3D High mobility group box domain 23 139 IPR036910 -
Gma01g01171 169 CDD HMG-box 53 119 - -
Gma01g01171 169 MobiDBLite consensus disorder prediction 89 109 - -
Gma01g01171 169 SUPERFAMILY HMG-box 44 125 IPR036910 -
Gma01g01171 169 SMART hmgende2 52 123 IPR009071 -
Gma01g01171 169 Coils Coil 104 124 - -
Gma01g01171 169 MobiDBLite consensus disorder prediction 122 143 - -
Gma01g01171 169 MobiDBLite consensus disorder prediction 144 169 - -
Gma01g01171 169 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 161 - -
Gma01g01171 169 Pfam HMG (high mobility group) box 53 122 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01171 Gma-Chr1 41661227 41664404 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma01g01171 HMG_box 1e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01171 K25507 - gmx:100305961 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01171 01 41661227 41664404 Gma01g01171 01 41661227 41664404 ECH