Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01170 ATGGCCACCGCAACAGCAGCAGCCACCTCGTCCTTCATGGGGACGCGCCTCCTGGAGGCCCATTCCGGGGCGGGGCGGGTGCAGGCCCGGTTCGGGTTTGGCAAGAAGAAAGCCGCCGCCCCGAAGAAAGTTTCCAGGGGGTCGGGCTCTAGCTCCGATAGGCCCCTGTGGTATCCGGGCGCCAAGGCGCCCGAGTACCTGGATGGGAGCCTTGTCGGAGACTACGGGTTCGACCCATTTGGGCTAGGGAAGCCCGCCGAGTACCTGCAGTTCGAGTTGGACTCGCTGGACCAGAACCTTGCGAAGAACGTGGCTGGGGACATCATTGGGACCAGGACCGAGCTCGCGGACGTGAAGTCCACGCCGTTCCAGCCCTACAGCGAGGTGTTCGGGCTGCAGAGGTTCCGCGAGTGCGAGCTCATTCACGGGAGGTGGGCCATGCTCGCCACTCTCGGAGCTCTCACTGTTGAGTGGCTCACTGGTGTTACATGGCAAGACGCCGGAAAGGTGGAGCTAGTGGAAGGTTCATCATACCTAGGGCAACCACTTCCATTCTCAATCACCACACTGATCTGGATCGAGGTTCTCGTAATTGGCTACATAGAGTTCCAGAGGAACGCAGAGCTGGACCCAGAAAAGAGGCTGTACCCAGGTGGCAGTTACTTCGACCCACTGGGCCTGGCCTCAGATCCAGAGAAGAAAGCCACCCTTCAATTGGCGGAGATCAAGCACGCCCGTCTCGCCATGGTGGGCTTCTTGGGCTTTGCAGTCCAAGCTGCCGCCACTGGCAAGGGCCCGCTCAACAACTGGGCCACCCACTTGAGTGACCCACTCCACACAACCATCATTGACACCTTCTCATCCTCCTCTTAA 873 0.6025 MATATAAATSSFMGTRLLEAHSGAGRVQARFGFGKKKAAAPKKVSRGSGSSSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01170 290 Gene3D Chlorophyll a/b binding protein domain 57 290 - -
Gma01g01170 290 SUPERFAMILY Chlorophyll a-b binding protein 48 287 - -
Gma01g01170 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 289 IPR001344 GO:0009765|GO:0016020
Gma01g01170 290 Pfam Chlorophyll A-B binding protein 63 259 IPR022796 -
Gma01g01170 290 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 2 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01170 Gma-Chr1 41649155 41652051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01170 12 289 Chloroplast and Mitochondria Gene Families AT3G08940 85.305 2.45e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01170 K08915 - gmx:100785180 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01170 01 41649155 41652051 Gma01g01170 01 41649155 41652051 ECH
Gma03g00490 03 8816758 8818968 Gma01g01170 01 41649155 41652051 GST