Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01166 ATGTTGGTTGAGAAAACTCTGGAAAACATCAAGAAAAAAGTAACCCCAACCAAATCAAATCCACTTCAACACTCCGAAGAACAAAAATGCTACTCCTTCCCATGCTTTCTCTCTCTCCCTCCTTCCCCTCTCTTGCTTCGAACCGTTATCTCCAATTTCGACCTCGTCGGAGCCGCCGCGGAGTCCGGCGATGATGAGTTCACGGTGAAGTTGAGGTACCTGTTCGAGCTGAGCGCGACGGAGACCGACGTCGCGTTCGGGAAGTGGTTCGGTCTCCGCTACATTGATACTCTCTTGGACCACTCCAAGTCAATGTTTCAGACCCTCCTTTTGCTTTATTCATACGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGGTTACAATGGGACAATTGATGGACAAGGGTGTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCTAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACACAAGTGACATTATAATTCAAGGGCTGACCATTCTTGCTCCAGTTGACTCTCCAAACACTGATGGAATAGATCCAGATTCTGAAACTGAAAAAGCACAAAGCTCTTTACCTTCCCACAGGAGAGTTCTAAGCACTGAAAGGTCTCCAGATCATAATCCTAGAAATCCCTTTGAAAACTCAAACATTGATAAAGGGAAGAAGTTTACTGAGAATTCTGCTGCTCATTGGGATATGGTTCATCCAATTTTGGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTACATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTCTCCGAGTGTATCCAATTGATTGATGAGGTCCGGCTGCTTCCTGAAGACCATAAAGCAAAAGTAGAAAAGCTAGAGGAGTTGATAACTTATCTGTTGTTGCTTATGATCACTCCATTCCATCTCATCTTGTTTTTCTGGAAAGCAAGGTTTATCAACAAAGAACCTTTAGTTTCCATTGCTGATCTTACCCTTTTCATTTATAAAGAATTGGTTGTAAATGTCCATTACATGGAATGCTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACTAGAGATGGGAGCCAAGCCCAATGGTTTGTAGATAGACAGGCAACATTTGAAGCAATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATTACGGGTTGGTGGTTGTGGCCAGAGCTATATCTGAGACGGCCTTTTGATAGCTTTTCTACCTCTCGGTTAGATTCATTACTAGAAGAAAAGGCTAACCAAGGGGTTCAAATCTATGTGCTTCTCTACAAGGAGGTTTCTCTAGCTTTAAAAATCAACAGCTTGTACAGTATGAGAAGACTGTTAAAAATTCATGAGAATGTGAGGGTATTATGCTATCTTGATCATTTCGCTGCTCGTGTGTATTTATGGTCACACCATGAAAAACTTGTGATTATTGATTACAAGATTTGCTATATCGGAGGATTAGATTTATGCTTTGGTTGA 1719 0.4136 MLVEKTLENIKKKVTPTKSNPLQHSEEQKCYSFPCFLSLPPSPLLLRTVISNFDLVGAAAESGDDEFTVKLRYLFELSATETDVAFGKWFGLRYIDTLLDHSKSMFQTLLLLYSYGRGRDAPDGRFSSLIFGTNLTDVIITGYNGTIDGQGCYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYTSDIIIQGLTILAPVDSPNTDGIDPDSETEKAQSSLPSHRRVLSTERSPDHNPRNPFENSNIDKGKKFTENSAAHWDMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVSECIQLIDEVRLLPEDHKAKVEKLEELITYLLLLMITPFHLILFFWKARFINKEPLVSIADLTLFIYKELVVNVHYMECFGSFAPIRGLTRDGSQAQWFVDRQATFEAIATSIQDAKSEIFITGWWLWPELYLRRPFDSFSTSRLDSLLEEKANQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHENVRVLCYLDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01166 572 MobiDBLite consensus disorder prediction 215 262 - -
Gma01g01166 572 Gene3D Endonuclease Chain A 433 572 - -
Gma01g01166 572 Gene3D Cupin 227 363 - -
Gma01g01166 572 Gene3D - 101 226 IPR012334 -
Gma01g01166 572 SUPERFAMILY Phospholipase D/nuclease 423 569 - -
Gma01g01166 572 PANTHER PHOSPHOLIPASE D ZETA 2 422 572 - -
Gma01g01166 572 SUPERFAMILY Clavaminate synthase-like 278 367 - -
Gma01g01166 572 Pfam JmjC domain, hydroxylase 264 337 IPR003347 -
Gma01g01166 572 SUPERFAMILY Pectin lyase-like 126 225 IPR011050 -
Gma01g01166 572 Pfam Phospholipase D Active site motif 546 572 IPR001736 GO:0003824
Gma01g01166 572 PANTHER PHOSPHOLIPASE D 422 572 IPR015679 -
Gma01g01166 572 ProSiteProfiles JmjC domain profile. 90 354 IPR003347 -
Gma01g01166 572 SMART cupin_9 157 354 IPR003347 -
Gma01g01166 572 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 546 572 IPR001736 GO:0003824
Gma01g01166 572 Pfam Glycosyl hydrolases family 28 129 225 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01166 Gma-Chr1 41495421 41502214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01166 411 572 Phospholipase D Gene Family (Wang group) AT3G05630 66.467 1.18e-66 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma01g01166 Glyco_hydro_28 5e-15 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01166 K01115 - gsj:114405045 504.212