Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01165 ATGTTCAGCTCCATGAACCAGATCGTCTTCGCCGAAGAGACTAACGACCCCGTCTCCGACCACCGCATCCATTACAGTTCCCATACCATCGAAGACAATGGCGTTGCTGTCAAAGATGTTTCCGCCGTTCCAGGCCTTGAAATCTCTATCAACGATTCTAGCCAGCTCACGCTCTCGTTTCTCGGCCAAGTTTATGTTTTCAATGCTATTACACCTGATAAGGCTCTTTTTTCCCCTTCTCTTTTCACTTTTTCCCTTTTTAAATCACCGCACCTACGTTGCTGCAAGTTTCCTCCAACTGCTGCTACTGTCAATTCCTTGCTCCTCTTGGGAATATGTGGCCCTCCAGACACCATTTTTAGGAATGTTGTGGAAATGGATTTAGCTGATTTAGAGTGTTATGGAGTTGAAAATCCTAACGCACGATTGTCTTGTTTTGTCAACAAGGCTTTTGCAGATGTTGGTAGTGACATGGCAAAGCTTGTCCTTGGTTGTGTTTCGATAGAAGTGGATGTGCGGCTTGCTTATGACACACATGCCATTATCAGGAAGAAGGACTTGACTGATTCAATTGTCTTAAGGAACATGGGTGTAGGTATAGGTCATTCTCTTCTTGCCTACAAAAGCACGCTTCAAGGAATAGGGAAGCTTCAGGTATTCAGTGCAACATGGGATTGGAAGCTTCAGGTTAATGAAGCTCGCTTGGGTAAAGACTTGATTCAAAGCTGGGAGGTGCTTGCTAAACTAATTAGCTTGTTGAATCAAGAAATGTCCTTCAATCATGCTCAAGGTCTTAACTTCAATGATCTAGTTGCACTTTCAGAATGTCTGGCCAGCCTTTCGAAGATGGCGGCGCTTTGGCCGGCTACTCCCTCTCCAACTTCGACGCGGTCAAGGACTCCGCCGGTGACTCCTCCCCGATTATCGGTGGCGCGCCGTACAATGCCGGTGGAGACTTCGTCTCCGCCTCCGATCTACTCCGTCGCCGCGTTCTCGCCGGAGCAGAATGGGAAGGGTGTGGATGGTGGTTTCGGTGCCTCAGATGGCCCGATCTTGCCGCCTCCGACGGATATGGTTGCGAAGGAAGGGTTTGCTTTGAGAGAATGGAGAATGCAAAACGCGATTCAATTGGAGGAAAAGGAGAAGAAGGAGAAGGAGATGCGGTCGCAGATCATAGAGGAAGCTGAAGAGTACAAAATTGAGTTCTACAGAAAGCGTGAGGTTAATGCTGAGAAAAACAAGGCTTCTAACAGGGAAAGAGAGAAGCTATTTTTGGCAAGCCGGGAGAAGTTCCATGCTGAAGCTGACAAAAATTACTGGAAGACAATCGGTGAACTCATTCCGCACGAAGTGCCTGCGATAGAGAAGAGAGGGAAAAAGGACAAAGTGAAGAAGCCTTCTATTGCTGTAATCCAGGGCCCAAAACCAGGGAAGCCAACTGATCTTTCAAGAATGCGCCATATATTATTGAAGCTCAAACATAATCTCCCTTCACATATGAAGCCCAAGCCTCCACCATCAGAAACCAAAAAGGATGCCAAAACTGGACCTCTTGATGGAGCTAGCACAAGTTCTAATCCTCCCAAGGTTGTGCCTGTGGCAATTCCTGAGGCTGTTGCTGCAGCTTGA 1629 0.4733 MFSSMNQIVFAEETNDPVSDHRIHYSSHTIEDNGVAVKDVSAVPGLEISINDSSQLTLSFLGQVYVFNAITPDKALFSPSLFTFSLFKSPHLRCCKFPPTAATVNSLLLLGICGPPDTIFRNVVEMDLADLECYGVENPNARLSCFVNKAFADVGSDMAKLVLGCVSIEVDVRLAYDTHAIIRKKDLTDSIVLRNMGVGIGHSLLAYKSTLQGIGKLQVFSATWDWKLQVNEARLGKDLIQSWEVLAKLISLLNQEMSFNHAQGLNFNDLVALSECLASLSKMAALWPATPSPTSTRSRTPPVTPPRLSVARRTMPVETSSPPPIYSVAAFSPEQNGKGVDGGFGASDGPILPPPTDMVAKEGFALREWRMQNAIQLEEKEKKEKEMRSQIIEEAEEYKIEFYRKREVNAEKNKASNREREKLFLASREKFHAEADKNYWKTIGELIPHEVPAIEKRGKKDKVKKPSIAVIQGPKPGKPTDLSRMRHILLKLKHNLPSHMKPKPPPSETKKDAKTGPLDGASTSSNPPKVVPVAIPEAVAAA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01165 542 Pfam Adenylosuccinate lyase C-terminal 185 251 IPR013539 GO:0004018|GO:0006188
Gma01g01165 542 ProSiteProfiles Tify domain profile. 49 84 IPR010399 -
Gma01g01165 542 SUPERFAMILY Aldolase 96 184 - -
Gma01g01165 542 Pfam Clathrin light chain 361 463 IPR000996 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gma01g01165 542 PANTHER CLATHRIN LIGHT CHAIN 321 539 IPR000996 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gma01g01165 542 Coils Coil 366 397 - -
Gma01g01165 542 Pfam tify domain 53 75 IPR010399 -
Gma01g01165 542 PANTHER CLATHRIN LIGHT CHAIN 3 321 539 - -
Gma01g01165 542 Gene3D - 243 258 - -
Gma01g01165 542 MobiDBLite consensus disorder prediction 457 542 - -
Gma01g01165 542 Gene3D Fumarase/aspartase (Central domain) 180 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01165 Gma-Chr1 41403655 41414465 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma01g01165 Clathrin_lg_ch 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01165 - - gmx:100783050 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01165 01 41403655 41414465 Gma01g01165 01 41403655 41414465 ECH