Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01139 ATGGAGGGCAAAGAAGAGGATGTGAGAGTTGGAGCCAACAGGTACGGAGAGAGGCAGCCAATAGGAACCGCTGCTCAGGCCAAAGACTACAGAGAGCCACCCTCTGCACCTCTCTTTGAGGCCGGGGAGTTGTCATCCTGGTCTTTCTATAGGGCTGGCATAGCAGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACGGTCCTCACTGTGATGGGTGTGGCCAAATCCAAGAGCAAGTGTTCTACCGTGGGCATCCAAGGCATTGCTTGGGCTTTTGGGGGAATGATATTTGCTCTTGTTTATTGCACTGCTGGCATCTCGGGGGGTCATATTAACCCAGCAGTGACGTTTGGGCTGTTCTTGGCACGCAAGCTCTCTATGACAAGGGCAATTTTTTATATAATCATGCAGTGCTTGGGAGCTATATGTGGTGCCGGTGTAGTTAAGGGGTTCGAGCCTCACCTCTATGAGAGGCTTGGTGGTGGTGCCAACACAATCGCTAAAGGGTACACCAATATTGCTGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTACACTGTCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCACGTTCCGATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCACTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCATTATCTTCAACAAAGACCAAGCTTGGGATGACCAT 762 0.4974 MEGKEEDVRVGANRYGERQPIGTAAQAKDYREPPSAPLFEAGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSMTRAIFYIIMQCLGAICGAGVVKGFEPHLYERLGGGANTIAKGYTNIAGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAAIIFNKDQAWDDH 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01139 254 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Gma01g01139 254 Pfam Major intrinsic protein 43 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 SUPERFAMILY Aquaporin-like 44 246 IPR023271 -
Gma01g01139 254 CDD MIP 51 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 254 IPR034294 -
Gma01g01139 254 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 Gene3D Glycerol uptake facilitator protein. 36 254 IPR023271 -
Gma01g01139 254 TIGRFAM MIP: MIP family channel proteins 55 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma01g01139 254 PANTHER AQUAPORIN PIP1-2 ISOFORM X2 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01139 Gma-Chr1 40378627 40381054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01139 1 254 Major Intrinsic Protein MIP AT2G45960 86.275 6.50e-165 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01139 K09872 - gmx:100781984 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01820 18 50595437 50598039 Gma01g01139 01 40378627 40381054 PCT
Gma01g01139 01 40378627 40381054 Gma18g01820 18 50595437 50598039 PCT