Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01127 ATGCTTCTTGATTATATTCTTCTTAGCAGCTCCACTAGTCCACCACTCTTCACATCTTCTCTCACTTTGAATTCAAAGAGAGAAACAATGAACAGGGGAATTGAAGTTCTTTCTCCAGCCTCATACCTCCAGAGTTCCAATTGGTTGTTCCAAGAAAGCTCGGGGACCAGGTGGACTCCACAGGAGAACAAGCTCTTTGAGAATGCTTTGGCTGTGTTTGACAAGGACACGCCGGACCGGTGGCTGAAGGTGGCCGCCTTGATTCCGGGCAAGACGGTCGGTGATGTGATCAAACAGTACAGGGAACTTGAAGCAGATGTGAGTGTCATTGAATCTGGGTTTATCCCAGTTCCAGGGTACACTGCTACTGATTCCTTCACATTGGAGTGGGTCAATAATCAAGGATTTGGTGGGCTCAGGCAGTTTTATGGTGTTACTGGCAAAAGGGGTGCTTCCAATAGACCATCTGAGCAGGAGAGGAAGAAAGGAGTGCCATGGACTAAAGAGGAGCACAGACAATTTCTGACGGGTCTGAAGAAGTATGGTAAAGGAGACTGGAGAAACATTTCTCGCAATTTTGTGATCACAAGGACTCCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCATCAGGCAACTAAGTGGGGGAAAGGATAAGAAGAGATCCAGTATCCATGACATCACAATGGTGAATCTCCCAGAAGCAAAATCTCTTTCATCTGAGAGTAACAGACCCTCTTCACTAGATCACTCAGTGAAGGATGTGAATCCACCACGCCAGAATCAGAAATTGTCTACTACCATGGTAATTAAACAGGAACATGATTGGAAATTGCCATGTGAAACTGTGCCTATGCATTTCAATTCCACAAATAGAAACATGTTCATGACACAACTTTGTGGGATTTCTTCAAATGGGTCTAAACCACTTCAGGAGCAGTATTTCCTCAGTGGATGCCAATTTGGACCTTATGGTACAATTATTCAAATGCAGTCCATGCAAAATCAATGA 1014 0.4428 MLLDYILLSSSTSPPLFTSSLTLNSKRETMNRGIEVLSPASYLQSSNWLFQESSGTRWTPQENKLFENALAVFDKDTPDRWLKVAALIPGKTVGDVIKQYRELEADVSVIESGFIPVPGYTATDSFTLEWVNNQGFGGLRQFYGVTGKRGASNRPSEQERKKGVPWTKEEHRQFLTGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKKRSSIHDITMVNLPEAKSLSSESNRPSSLDHSVKDVNPPRQNQKLSTTMVIKQEHDWKLPCETVPMHFNSTNRNMFMTQLCGISSNGSKPLQEQYFLSGCQFGPYGTIIQMQSMQNQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01127 337 MobiDBLite consensus disorder prediction 147 167 - -
Gma01g01127 337 MobiDBLite consensus disorder prediction 153 167 - -
Gma01g01127 337 CDD SANT 57 103 IPR001005 -
Gma01g01127 337 CDD SANT 165 210 IPR001005 -
Gma01g01127 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 214 IPR017930 -
Gma01g01127 337 SUPERFAMILY Homeodomain-like 56 111 IPR009057 -
Gma01g01127 337 SUPERFAMILY Homeodomain-like 159 213 IPR009057 -
Gma01g01127 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 161 213 IPR006447 GO:0003677
Gma01g01127 337 Pfam Myb-like DNA-binding domain 165 210 IPR001005 -
Gma01g01127 337 PANTHER MYB TRANSCRIPTION FACTOR MYB51 31 314 - -
Gma01g01127 337 MobiDBLite consensus disorder prediction 236 263 - -
Gma01g01127 337 Gene3D - 164 214 - -
Gma01g01127 337 ProSiteProfiles SANT domain profile. 166 214 IPR017884 -
Gma01g01127 337 ProSiteProfiles Myb-like domain profile. 158 210 IPR001005 -
Gma01g01127 337 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 31 314 IPR043363 -
Gma01g01127 337 Gene3D - 50 117 - -
Gma01g01127 337 SMART sant 54 106 IPR001005 -
Gma01g01127 337 SMART sant 162 212 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01127 Gma-Chr1 39907973 39909727 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g01127 Myb_DNA-binding 4.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01127 - - gmx:100813517 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01127 01 39907973 39909727 Gma18g00282 18 2354988 2357044 ECH
Gma01g01127 01 39907973 39909727 Gma11g02292 11 38282740 38285188 ECH
Gma01g01127 01 39907973 39909727 Gma01g01127 01 39907973 39909727 ECH
Gma01g01127 01 39907973 39909727 Gma18g00613 18 6014645 6017075 ECH