Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01105 ATGACCTTGCAACCTCTGAATCTTGTTTTAACAAAGACCGTGTTTGTGGTAAGACCAAAAGGAGGCATACTAGCCAGCAGAGCTGGTCACCCCAAGGCAGTTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAACCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAGTGGAAATTCAGGCATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACCGGATGGAGTGTCTTTGTGACTGCTAAAAGACTAGTTGTTGGTGATTCTATGTTGTTTATCTGGCAAGGAGGGAATATCCTAACATATGAATCTGTATTAGGGTCAAGAGAAAATTTTGTAGAACCAACAATTGTTGAAATTTCTCTAGATGCTCCTGTAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGACTCTGGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTATTTCAATCTTTACCCAAAACCTGGAACTATATTCAAGTGGATCAGGTGACATTGATGATGGTGGTGATGATAGCAATGTTGATGGTGATGGTGATGTCGGTGGTGACGATGGTGGCAATGATAGTAGAGGTGGTGGTAGTGGTGTTGGTGGTGATAACAATGAGGATGGTGATGTCATTGATGATTGA 684 0.4108 MTLQPLNLVLTKTVFVVRPKGGILASRAGHPKAVEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVTAKRLVVGDSMLFIWQGGNILTYESVLGSRENFVEPTIVEISLDAPVVKEELFGPVLYVMKFQTLEEAIALNNSVPQGLSISIFTQNLELYSSGSGDIDDGGDDSNVDGDGDVGGDDGGNDSRGGGSGVGGDNNEDGDVIDD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01105 227 CDD B3_DNA 31 104 IPR003340 GO:0003677
Gma01g01105 227 MobiDBLite consensus disorder prediction 186 200 - -
Gma01g01105 227 SUPERFAMILY DNA-binding pseudobarrel domain 33 108 IPR015300 -
Gma01g01105 227 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 107 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma01g01105 227 MobiDBLite consensus disorder prediction 179 227 - -
Gma01g01105 227 ProSiteProfiles B3 DNA-binding domain profile. 40 114 IPR003340 GO:0003677
Gma01g01105 227 Gene3D - 25 115 IPR015300 -
Gma01g01105 227 Pfam Aldehyde dehydrogenase family 110 204 IPR015590 GO:0016491
Gma01g01105 227 PANTHER AUXIN RESPONSE FACTOR 6 32 107 - -
Gma01g01105 227 SUPERFAMILY ALDH-like 100 215 IPR016161 GO:0016491
Gma01g01105 227 SMART B3_2 23 115 IPR003340 GO:0003677
Gma01g01105 227 Pfam B3 DNA binding domain 45 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01105 Gma-Chr1 39044130 39054436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01105 4 124 B3 DNA Binding Superfamily AT1G30330 61.475 1.41e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma01g01105 Aldedh 1.3e-17 CL0099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01105 - - psom:113290113 145.206