Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01079 ATGATGGGTGCCTTCGTCGAGGTTCACCCACAGTCGCACACGAAGGTGCTATCCCTAAACACCTTGTTGTTAGGGTTATGTTTCCGTCCTACCAATGATGAGCTTATTGACTACTACCTCCGCTCGAAGATCAACGAAAATGGTGATGATGTTTGGATTATTCATGAGATTGATGTCTACAAATGTGTGTTTTTTGCTAGAGAAACAAGAAAATTCCATTGTGGTGCGGAAGAGGTTTCTAGAGGAAAATGA 252 0.4246 MMGAFVEVHPQSHTKVLSLNTLLLGLCFRPTNDELIDYYLRSKINENGDDVWIIHEIDVYKCVFFARETRKFHCGAEEVSRGK 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01079 83 SUPERFAMILY NAC domain 14 62 IPR036093 GO:0003677|GO:0006355
Gma01g01079 83 Pfam No apical meristem (NAM) protein 25 62 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01079 Gma-Chr1 38540937 38541188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01079 16 61 NAC Transcription Factor Family AT3G49530 60.870 2.67e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma01g01079 NAM 9.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01079 - - gmx:100170715 92.0485