Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01056 ATGGCTGCAAATGAAGATGCTGCCCATGAATTTGCACCAAAGAAGAAGCCACCTTCAGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCCGGGAGTTTGATGAAAGCTTTGATGAGGCCTGGTGGGGGTGATGCTGGACCTTCTGATGGTGACCAGATTATCTATCACTGCACGATTCGAACTTTGGATGGAGTACTTGTGGAGTCTACCAGATCTGATTATGGAGGCAAGGGCATCCCAATAAGACATGTTTTGGGCAAAAGCAAGATGTTATTGGGATTGCTAGAAGGAATTCCATCAATGTTGAAGGGCGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGATGATTGCCCTGTTTCTGCTCCTGATGGTTTTCCTAAAGATGATGATCTTCATTTCGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGTTGTTACTGATGACTTGGGAGTTGTAAAAAAGGTAGTACGTGAAGGGCAGGGCTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAAGACAGTTACTGGGAAATTGATCATGTCACATACAGAAGGAGAACCATACTTCTTTACATTTGGAAAATCAGAGGTACCTAAAGGCCTTGAAATGGCGATAGGAACAATGGTTCGGGAAGAGAAGGCTGTTATATATGTCACCAGTCAGTATTTAACTGAGTCTCCTCTCATGCCTGTAATAGAAGGTTATGATGAAGTTCATTTTGAAGTGGAGCTGGTTCACTTTATTCAGGTGAGGGACATGCTTGGAGATGGGCGCCTAATAAAATGCCGAATTCATGATGGGAAAGGTGATTTTCCAATGGACTGTCCCCTTCATGACAGTCTGCTTCGTGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAGGGTATTCTATGATACAAGGGTAGACAATGATGGTCAGCCATTGGAGTTCTATTCTGGAGAAGGGCTTGTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGGCCTGTAAATGTCCCTGAGGGTGCTCATATTCAGTGGGAAATAGAGCTTCTAGGTTTTGAAACGCCAAAGGACTGGACTGGATTGGACTTTAAAAGTATAATGAATGAAGCTGAAAACATCAGAAACACGGGTAACAGGCTGTTCAAAGAAGGAAAATATGAACTTGCCAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGAAGAAGGAAAATTTTTTGCTGACACTCGTAATTTGCTACACCTGAATGTTGCTGCATGCCATCTAAAATTGGGAGAATGCAGAAAGTCCATTGAGACTTGCAATAAGGTTTTGGAAGCAAATCCTGCACATGTCAAGGGTCTTTATCGTCGTGGAATGGCCTACATGGCTGCTGGAGATTTTGAAGAAGCGAGGGCTGATTTCAAAATGATGATGAAAGTGGACACGTCAACTGAATCAGATGCAACTGCTGCTCTTCAAAAACTGAAGCAGAAGGAGCAGGATGTTGAGAAGAAAGCTAGGAAACAATTTAAAGGGCTATTTGATAAGAAGCCTGGAGAGATTGCGGAAGCTAAAGCTGATGTAGATGGAGATCTGATCACAAGTGAAATCCAGAAGGACGATGAAGTACATGGGGACTCCGATGGAACAAATTCAGAGGACTCACATGAAGCTCCACCTGAGGCACAACGAACTGGTTGGTTCTCACTCTTTTGGCCTTCTGGCAGAAGACTTTTTGAATCTCTTGGAATTAATAGATGTACCATACTTTAA 1869 0.427 MAANEDAAHEFAPKKKPPSEDEKRKKKIVPGSLMKALMRPGGGDAGPSDGDQIIYHCTIRTLDGVLVESTRSDYGGKGIPIRHVLGKSKMLLGLLEGIPSMLKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKDDDLHFEIELIEFFKAKVVTDDLGVVKKVVREGQGWESPREPYEVKAWISAKTVTGKLIMSHTEGEPYFFTFGKSEVPKGLEMAIGTMVREEKAVIYVTSQYLTESPLMPVIEGYDEVHFEVELVHFIQVRDMLGDGRLIKCRIHDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKRVFYDTRVDNDGQPLEFYSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPVNVPEGAHIQWEIELLGFETPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKFFADTRNLLHLNVAACHLKLGECRKSIETCNKVLEANPAHVKGLYRRGMAYMAAGDFEEARADFKMMMKVDTSTESDATAALQKLKQKEQDVEKKARKQFKGLFDKKPGEIAEAKADVDGDLITSEIQKDDEVHGDSDGTNSEDSHEAPPEAQRTGWFSLFWPSGRRLFESLGINRCTIL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01056 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PASTICCINO1 67 557 IPR031135 GO:0030154|GO:0042761|GO:0099402
Gma01g01056 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 260 IPR001179 GO:0003755
Gma01g01056 622 SUPERFAMILY TPR-like 397 540 IPR011990 GO:0005515
Gma01g01056 622 MobiDBLite consensus disorder prediction 8 29 - -
Gma01g01056 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 143 IPR001179 GO:0003755
Gma01g01056 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 292 380 IPR001179 GO:0003755
Gma01g01056 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 257 IPR001179 GO:0003755
Gma01g01056 622 Gene3D - 261 382 IPR046357 GO:0003755
Gma01g01056 622 Coils Coil 517 540 - -
Gma01g01056 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 383 IPR001179 GO:0003755
Gma01g01056 622 SUPERFAMILY FKBP-like 25 149 - -
Gma01g01056 622 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515
Gma01g01056 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 67 557 - -
Gma01g01056 622 SUPERFAMILY FKBP-like 265 389 - -
Gma01g01056 622 Gene3D Tetratricopeptide repeat domain 394 548 IPR011990 GO:0005515
Gma01g01056 622 SMART tpr_5 449 482 IPR019734 GO:0005515
Gma01g01056 622 SMART tpr_5 400 433 IPR019734 GO:0005515
Gma01g01056 622 SMART tpr_5 483 516 IPR019734 GO:0005515
Gma01g01056 622 SUPERFAMILY FKBP-like 151 259 - -
Gma01g01056 622 Gene3D - 1 148 IPR046357 GO:0003755
Gma01g01056 622 MobiDBLite consensus disorder prediction 569 592 - -
Gma01g01056 622 Pfam Tetratricopeptide repeat 484 507 IPR019734 GO:0005515
Gma01g01056 622 Gene3D - 149 260 IPR046357 GO:0003755
Gma01g01056 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 146 IPR001179 GO:0003755
Gma01g01056 622 MobiDBLite consensus disorder prediction 569 594 - -
Gma01g01056 622 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01056 Gma-Chr1 37663797 37673715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01056 47 548 Calmodulin-binding Proteins AT5G48570 30.078 2.31e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01056 - - gmx:100527937 1266.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01056 01 37663797 37673715 Gma01g01056 01 37663797 37673715 ECH