Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01048 ATGGTGAGAGCCAGAGACGATCTATGCATAACCGTTCCCAGCTTCTTCAAGTGCCATATCTCTCTCGACATCATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTATGACCGCTCCAACATCCAACGCTGGCTCAATGCTAGCAACAACACCATGCAACTCCTCCAAACCAAAGACTTTGTGCCCAACTGCACTCTCCAAAGCCTCATCCAGATCTGGTCTAATTCAGCTCGCCACCAAACTGCTTCCGAACAAGTCCTTTCCCGGGACCAACTCATTTGA 285 0.5088 MVRARDDLCITVPSFFKCHISLDIMKSPVSLCTGVTYDRSNIQRWLNASNNTMQLLQTKDFVPNCTLQSLIQIWSNSARHQTASEQVLSRDQLI 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01048 94 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 84 - -
Gma01g01048 94 ProSiteProfiles U-box domain profile. 11 81 IPR003613 GO:0004842|GO:0016567
Gma01g01048 94 SUPERFAMILY RING/U-box 6 76 - -
Gma01g01048 94 PANTHER WDSAM1 PROTEIN 5 84 IPR045185 GO:0061630
Gma01g01048 94 SMART Ubox_2 15 74 IPR003613 GO:0004842|GO:0016567
Gma01g01048 94 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Gma01g01048 94 Pfam U-box domain 12 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01048 Gma-Chr1 37164986 37165270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01048 5 85 U-box Gene Family AT5G64660 69.412 1.41e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01048 - - gmx:100801033 145.976