Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01027 ATGCCTTGCATCTATCGGATTGCCAAGTCAACACTATGGAAACACGAGTATAAGCTTGACACCTTTATCCATAAGAACTCTCAAGTCAGCGAGCATACCTCAGTGGTTGGTTCTGGTGAGAGTGGTGAGGATGAGCTGTATGAGCAGCAGTGGAAGGCATGCGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTCTTCTATTTCCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACAAACCAGGAACTGAATCAGAGGATTCCTTTGCTGAAGCTTCCCACGAAGATCCTATGTCGAGTTGTGAATGTTCATTTACTGGCTGAGCAAGAAACGGACGAGGTTTATGCGCAAATTACTTTGGTGCCGGAATCTAGTCAAGACGAGCCTACAAATGCTGATCCGTGCACTGCTGAACCTCCAAGAGCACCAGTTCACTCGTTCAGCAAGGTCTTGACTGCTTCAGATACCAGCACCCATGGAGGCTTCTCCGTTCTCAGGAAACATGCCACGGAATGCCTTCCTGTGTTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCACGCAGACACTTGCTCACGACTGGCTGGAGTACTTTTGTGACCTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGCGTGGGCGTAAGACGTCTAGCTCGTCAAGCAAGTAGCATGCCTTCATCAGTGATTTCTAGTCAAAGCATGCACCTGGGGGTTCTTGCAACCGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAATTCATCATAGGCGTGAACAAGTATTTAGAGGCTATGGACAAAAAGTTCAGTGTCGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCCAGACCTGATAGGGTCTCACCATGGGAGATAGAACCCTTTGTTGCTTCTGCTTCTACACCCTCAGTTCAACCTACTATGGTAAAGACTAAAAGGCCCCGGCCACCCAGCGAAACTCCAGATGTTGACACAACATCTGTTGCTTCTGTTTTCTGGGATGCTGGTCTGCAACAGGCTGACATGGCACAAAAAAATGTTTTGGCGGAAAGCAAATGGAATGACAATACTGGTACGTGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGTGGCAACACTATGTTAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCGCATTCTAGTTGTCCCTCTCATTTGTTTCAGGACGTAACAGATGATAGCAAGATTGTCTCAGCTTGGCCGGTTTCAAAGCCTCACTCATCCAAATTGAACAATGATCATGTGCTCGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGACCTTATTGATCCTTCTAGGAACTCTCCTTCTGTAGAGAAGGCATCTGCACAAGCAGTAAATGTACCCAAAGTTACTACTGAAGGCTGTACCAGCACCTTGTCCCGAACCGATGCTGGCCATAAGTCAGATGTATCAATGGCTTCTTCCATGGAGAGGAAACAAGAACAGCTGCAAGTATCACCAAAGGATACTCAGAGCAAGCAAATTTGTAGAAGTCGAACCAAGGTTCAAATGCAGGGAGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGGTACGGTCAACTTATAAATGAATTGGAGGATATGTTTAACATCAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCCGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTGTGGAAGCAAACTGCCAATCTCCTCAGTGGAAGACGGGACCGTAATAAGCTCAGACACGACCGAAACCTGA 2154 0.4605 MPCIYRIAKSTLWKHEYKLDTFIHKNSQVSEHTSVVGSGESGEDELYEQQWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESSQDEPTNADPCTAEPPRAPVHSFSKVLTASDTSTHGGFSVLRKHATECLPVLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAMDKKFSVGMRFKMRFEGDDSAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVPRPDRVSPWEIEPFVASASTPSVQPTMVKTKRPRPPSETPDVDTTSVASVFWDAGLQQADMAQKNVLAESKWNDNTGTWHHMQTDMNSKSNSGNTMLRNQTEGSWLSSPHSSCPSHLFQDVTDDSKIVSAWPVSKPHSSKLNNDHVLDQVDKESKVETATSYRLFGIDLIDPSRNSPSVEKASAQAVNVPKVTTEGCTSTLSRTDAGHKSDVSMASSMERKQEQLQVSPKDTQSKQICRSRTKVQMQGVAVGRAVDLTMLDGYGQLINELEDMFNIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSCGSKLPISSVEDGTVISSDTTET 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01027 717 PANTHER AUXIN RESPONSE FACTOR 40 706 - -
Gma01g01027 717 MobiDBLite consensus disorder prediction 388 410 - -
Gma01g01027 717 Pfam AUX/IAA family 649 690 IPR033389 -
Gma01g01027 717 Pfam AUX/IAA family 545 642 IPR033389 -
Gma01g01027 717 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 706 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma01g01027 717 Pfam B3 DNA binding domain 151 251 IPR003340 GO:0003677
Gma01g01027 717 Gene3D - 601 694 - -
Gma01g01027 717 MobiDBLite consensus disorder prediction 568 601 - -
Gma01g01027 717 Gene3D - 312 387 - -
Gma01g01027 717 Gene3D - 148 252 IPR015300 -
Gma01g01027 717 SUPERFAMILY DNA-binding pseudobarrel domain 141 280 IPR015300 -
Gma01g01027 717 Pfam Auxin response factor 277 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma01g01027 717 SMART B3_2 151 253 IPR003340 GO:0003677
Gma01g01027 717 CDD B3_DNA 149 251 IPR003340 GO:0003677
Gma01g01027 717 SUPERFAMILY CAD & PB1 domains 608 682 - -
Gma01g01027 717 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Gma01g01027 717 MobiDBLite consensus disorder prediction 453 480 - -
Gma01g01027 717 ProSiteProfiles PB1 domain profile. 606 687 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01027 Gma-Chr1 36088303 36097595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01027 42 699 B3 DNA Binding Superfamily AT4G23980 58.974 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma01g01027 AUX_IAA 2.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01027 K14486 - gmx:100803911 1372.84