Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01010 ATGTTTGCTTCTCCTCGCAAAGAAAATGCAGAAAAAAGGGAACCTGTGAGTCCTATTATTCATTCTGGTGTCTCCCTCTTTGACTCTCTTAGAAAACCAAACACAATACAACACACCAACAAAAAGGGTCAATGCTGGACAAAGAGGAAGAAGTACTCTTTGAGCTCTAGTACTGGTTCACCAACAAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCCTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCCTACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAACGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCACTAGCCCCCACAATGAAATTCTATGCCATGACCTTGAAACTCAGCTGCACAAGCCAGTTCAAAGTCCTTTTGCTTCTCTAGGTGGTTATCTATATCCTTCTCCTCTTTGTGGATTGGCTTGTAAAAAAACTAACCCTAATTGTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCGCCTTCCAAGGCCTTATTGGCTCCATCAGCTAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTCCTGCCAGTAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCCACCCTCAAGCTGATACTACGAAACCCTCCAAGGGAATAATGGATTTCAGATGTAGGGGTAATAAGGGGAATAATGATGATATTGATGGGGATATAAACTTTAATTCAGTTGTGTATAGAACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACTCTATTTTCCCCAAAGTCAAGCTCAGTTGATAGGCATCAAGTGCAGCCAAAGATGTTTGAGTTTAGCCCTAGCTCAATGGAAGAGCTAGATCTGGAGTTAAGGCTTGGGAACAGGTCCAAGATATAG 1059 0.4221 MFASPRKENAEKREPVSPIIHSGVSLFDSLRKPNTIQHTNKKGQCWTKRKKYSLSSSTGSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPTSPHNEILCHDLETQLHKPVQSPFASLGGYLYPSPLCGLACKKTNPNCDPDFVASPSSSPSPSKALLAPSANIGTFREETMIPLYDSSILHKISPASNSSESWPNSAEDHRLYSCKFHPQADTTKPSKGIMDFRCRGNKGNNDDIDGDINFNSVVYRTHPSLQFESTKEPDHISCKKRKTDASSTLFSPKSSSVDRHQVQPKMFEFSPSSMEELDLELRLGNRSKI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01010 352 MobiDBLite consensus disorder prediction 48 69 - -
Gma01g01010 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Gma01g01010 352 Pfam C2H2-type zinc finger 93 117 - -
Gma01g01010 352 MobiDBLite consensus disorder prediction 306 324 - -
Gma01g01010 352 PANTHER OS07G0101800 PROTEIN 42 351 - -
Gma01g01010 352 MobiDBLite consensus disorder prediction 49 69 - -
Gma01g01010 352 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 42 351 - -
Gma01g01010 352 SUPERFAMILY beta-beta-alpha zinc fingers 90 119 IPR036236 -
Gma01g01010 352 SMART c2h2final6 93 115 IPR013087 -
Gma01g01010 352 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Gma01g01010 352 Gene3D Classic Zinc Finger 90 142 - -
Gma01g01010 352 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01010 Gma-Chr1 35375977 35377856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01010 69 124 C2H2 Transcription Factor Family AT2G37740 82.143 1.31e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma01g01010 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01010 - - gmx:100801427 620.928