Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00968 ATGTCTCCGCCATTGCTGGTTACCGAAGATGAAGGGCAGTGCCATGCCTCGATGGTAGCATCTGCATCTTCACCATCCCTGAACTGTTTCTCCCTAAATGAGGCCGGATTTAAAGAATGCAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGACAGTTCTACTGTCCCGAATTTGTCTGATGAGAAAAAGGAGAATCTGAATTTGAAGGCTACTGAGTTGAGGCTTGGCCTTCCGGGATCCCAGTCACCTGAAAGGGAGACAGAACTTTTCTCGTTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTGCTCATTGTCTCAAAAAACTGTGGTCTCGGGCAACAAAAGAGGTTTTGCTGACACAATGGACCCTGAGTTTCCTGGCAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGAGTTCAGCCTACCACAGTGAAAGAAATACCAAGCAAGGTGTTACAAGAACTTCCTTCAGCGGCAAATGGAACTGGTCATAACCATACATCAGGAGCTTCTATCAGTGGCAGTGCACCGGCTGCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAATAATGATGAAGTAGATGGAAAACCGGGTGCAGCAGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGAAATTATACAATGTACCAGGAACTGTCTTCTGCCCTTGAGAAAATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTCGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAGGAGCAGGTGCTAG 1053 0.4587 MSPPLLVTEDEGQCHASMVASASSPSLNCFSLNEAGFKECNYLGLSDCSSVDSSTVPNLSDEKKENLNLKATELRLGLPGSQSPERETELFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADTMDPEFPGNAGINMMLSPKPSGVQPTTVKEIPSKVLQELPSAANGTGHNHTSGASISGSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGAAALFVKVSMDGAPYLRKVDLRNYTMYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRC 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00968 350 PANTHER AUXIN-INDUCED PROTEIN 2 343 - -
Gma01g00968 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 343 IPR003311 GO:0005634|GO:0006355
Gma01g00968 350 Gene3D - 226 343 - -
Gma01g00968 350 MobiDBLite consensus disorder prediction 172 191 - -
Gma01g00968 350 SUPERFAMILY CAD & PB1 domains 230 331 - -
Gma01g00968 350 Pfam AUX/IAA family 72 341 IPR033389 -
Gma01g00968 350 ProSiteProfiles PB1 domain profile. 230 334 IPR000270 GO:0005515
Gma01g00968 350 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00968 Gma-Chr1 33996153 34002148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00968 232 330 B3 DNA Binding Superfamily AT1G19220 30.303 1.98e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma01g00968 AUX_IAA 1.4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00968 K14484 - gmx:100500373 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00968 01 33996153 34002148 Gma09g01887 09 44467750 44470855 GST