Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00950 ATGGCGTCCGATGGCTTCACCGACAAGAACACCGTGTTCAGAAAGCTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGACCCTTAAAATGAATGTCAAGGATCAAGATCCTATGTTGTACAACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACATGGTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATACACATCTAGAGCTGCAGATTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCAGAAGTCAAGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGTTTGAATATGTAGAAAATGTCCAATCATCTGACTTGAACACTGGAGGTTCTCATGTTCTTAGTcatgtgtctccaccaaagtcatcaagcttctttgcagactttggaatggatggtggctttccaaagaaatctgggccaagttcctccaaagtgcaaATtcaggaaactgacgaagcaagaaggaagttctcaaatgctaaatctatttcttcatctcaattttttggagatcagaacaaagctgcagatgtggattctcaagctactttgtctaagttttcgGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAA 1242 0.3824 MASDGFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRTLKMNVKDQDPMLYNSWSPEQLKTMSFGGNNRAHGFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSAQGVNGLPEVKTNEVPKENTLEKPEKPESTSSPRASHSVISGTVKKPIGAKKAVKSGGLGARKLTKKPSESLYEQKPEEPPAPVPSSTNSMPAGPSPTSRFEYVENVQSSDLNTGGSHVLSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQETDEARRKFSNAKSISSSQFFGDQNKAADVDSQATLSKFSGSSAISSADLFGDSRDNNIDLTAGDLINRLSFQAQQDLSSLKNIAGETGKKLSSLASTLMTDLQDRIL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00950 413 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Gma01g00950 413 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Gma01g00950 413 PRINTS HIV Rev interacting protein signature 72 93 IPR001164 GO:0005096
Gma01g00950 413 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 138 IPR001164 GO:0005096
Gma01g00950 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 413 - -
Gma01g00950 413 MobiDBLite consensus disorder prediction 143 157 - -
Gma01g00950 413 CDD ArfGap_ArfGap2_3_like 8 133 - -
Gma01g00950 413 Pfam Putative GTPase activating protein for Arf 11 110 IPR001164 GO:0005096
Gma01g00950 413 Gene3D Arf GTPase activating protein 2 145 IPR038508 -
Gma01g00950 413 MobiDBLite consensus disorder prediction 136 251 - -
Gma01g00950 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 413 - -
Gma01g00950 413 SMART arf_gap_3 10 136 IPR001164 GO:0005096
Gma01g00950 413 SUPERFAMILY ArfGap/RecO-like zinc finger 11 135 IPR037278 -
Gma01g00950 413 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00950 Gma-Chr1 32313524 32318819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00950 13 101 C2H2 Transcription Factor Family AT4G21160 37.778 6.74e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00950 K12493 K11855 gmx:100789796 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00950 01 32313524 32318819 Gma01g00950 01 32313524 32318819 ECH