Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00947 ATGCACTTTTTCAGGATCATAATTGCTCCCAGCCTTCAAGAAGGAAAGCTAATGCTTCCAAATAAATTTGTGGAGAAATACGGAGAAGGCTTACCAAATACTCTATTTCTTAAGGCTCCAAATGGTGCAGAATGGAAGTTGACTTTAGAAAAACGCGATGATAAAATGTGGTTTCAAAAGGGTTGGAGAGAATTTGCCAAACATCACTCTCTAGATCATGGCCATCTTTTGCTTTTTAGATATCAAAGAACATCCCATTTCCAGGTACACATCTTTGATGGTAGTGGCTTAGAGATAGAATACCCTCTTGGGAAAGTAGAAGGTAAAATGACCTCCAATTATCAAAAAAATAAACGTCCAAATGGTGAAAAATTGGAATATGAATTCCTTCAACCATGTATGGGAAGTCGCAAATGTGTTAAGGTTGATAATACCATGAAGCCAAAGCTAGGTTGCTCCGCATGCGCATCATATCGACAGAAAGGGCAAAGGAAAACTAAAATGACTACTACTGAGCATGTTACGGCTTTTGATAGAGCAAGTTATTTCAGACCTTGTAATCCATCCTTCCTCGTTGTCATCTATCCATCAAACGCCCGTTCACGAGGTCCTTTGAATTTTCCATCTAAGTTTTGTAAGAAACACATTGATTTGCGCAAGAACAGAGGAGATATCAATCTTGAGGTGTTAAACGGGAGAGTTTGGCATGCAAGATACCGAATAAGGACAGCCGAAACTAGAAGAAGATTTGAACTGTCAAGTGGATGGAAGACATTTGCCGAGGACAATAACTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTCATTCCTGCAACAAAACTCACCTTCCAGACTCTCGTCAAATATAGCAGTTTATCAAAGACCGAGAAAAGAAATGAAAATCGTCACTACTACCAACTCGTCACCCTCAAAGAGTTTCAGTTCTTTTGTATCAAACTTTACGTCGGGTATAATTAA 978 0.3906 MHFFRIIIAPSLQEGKLMLPNKFVEKYGEGLPNTLFLKAPNGAEWKLTLEKRDDKMWFQKGWREFAKHHSLDHGHLLLFRYQRTSHFQVHIFDGSGLEIEYPLGKVEGKMTSNYQKNKRPNGEKLEYEFLQPCMGSRKCVKVDNTMKPKLGCSACASYRQKGQRKTKMTTTEHVTAFDRASYFRPCNPSFLVVIYPSNARSRGPLNFPSKFCKKHIDLRKNRGDINLEVLNGRVWHARYRIRTAETRRRFELSSGWKTFAEDNNLKVGDVCTFELIPATKLTFQTLVKYSSLSKTEKRNENRHYYQLVTLKEFQFFCIKLYVGYN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00947 325 CDD B3_DNA 2 93 IPR003340 GO:0003677
Gma01g00947 325 CDD B3_DNA 188 279 IPR003340 GO:0003677
Gma01g00947 325 ProSiteProfiles B3 DNA-binding domain profile. 2 95 IPR003340 GO:0003677
Gma01g00947 325 PANTHER B3 DOMAIN-CONTAINING 1 286 - -
Gma01g00947 325 SMART B3_2 3 95 IPR003340 GO:0003677
Gma01g00947 325 SMART B3_2 190 289 IPR003340 GO:0003677
Gma01g00947 325 Gene3D - 167 289 IPR015300 -
Gma01g00947 325 Gene3D - 1 96 IPR015300 -
Gma01g00947 325 Pfam B3 DNA binding domain 190 281 IPR003340 GO:0003677
Gma01g00947 325 Pfam B3 DNA binding domain 10 94 IPR003340 GO:0003677
Gma01g00947 325 ProSiteProfiles B3 DNA-binding domain profile. 190 291 IPR003340 GO:0003677
Gma01g00947 325 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 286 - -
Gma01g00947 325 SUPERFAMILY DNA-binding pseudobarrel domain 2 95 IPR015300 -
Gma01g00947 325 SUPERFAMILY DNA-binding pseudobarrel domain 185 287 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00947 Gma-Chr1 31831995 31834559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00947 3 91 B3 DNA Binding Superfamily AT3G18990 29.670 9.23e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma01g00947 B3 3.5e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00947 - - gmx:100779136 322.398