Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00943 ATGCCTTCGCCGGAGTACGAAATGTCGTCATCGCCGGCCGCAGCGCCGTATAACACACCGCCGGCGCTTATTGCCTTTACGCTGACTGTGCTTGTATTGTGCTTCGTGGCGTTCAGCATCGTGTACATGTGCAAGTACTGCTTCTCGAGCGTGATCCACACTTGGGCCTTCCAGCGCACCCCTTCGGGTTCCCTCATTCGCCTCACGCCCCACAGGTCCCCTCCTCGGGGCCTCGACCCTGACCTTCTCCAAGTCTTCCCCACCTTCCCTTACTCCTCCGTTAAGGACCTCCGCAAGGATCAGAAGTACGGCCTTGAGTGCGCCATCTGTCTACTTGAGTTCGAGGATGACAACGTGCTCCGCCTCTTGACGCTCTGCTGCCACGTCTTCCACCAGGACTGCATCGACCTCTGGCTCCGCTCGCACAAGACCTGCCCTGTCTGTCGACGAGACCTCGATTCACCCCCGCCAGACGAAACGCAGAAAGCTAACGAGGGTGTGGTGGTGATGTCCACCAGCGGGGAGATACGCATTGATGTAACAGAAGGGCAAGACTGCGGTGGTGGTGATGATAATGATGGAAATCCAAGACAAGAGCATGAACGTGAGCATGAACACGAACATGGTTATGGCAATCACGAGGTCATGATTCATCAACAGGGGGAACAGATGTTTGCACGGTCGCATTCGACGGGGCACTCGATAGTTTTGATTAGAGGAGAGGGAGATGAGGGAAAGGATGATGACAAGTATACGTTGAGATTGCCGGAGCATGTTTTGAGAGTGAGGCATAATAATAAGCACAATTGTACGAGGAGCTGTGCGAGTTACAAGGACATTGCTAAGCTTGTTGCTCCTCCTGCTGCTGCTGCACCTTGTAGTAATTGTGGCTTTGTTCAACCAGTTCCTCCATCTAGCACCTCCTCCCCTGACCATACTCGAAAATAA 948 0.538 MPSPEYEMSSSPAAAPYNTPPALIAFTLTVLVLCFVAFSIVYMCKYCFSSVIHTWAFQRTPSGSLIRLTPHRSPPRGLDPDLLQVFPTFPYSSVKDLRKDQKYGLECAICLLEFEDDNVLRLLTLCCHVFHQDCIDLWLRSHKTCPVCRRDLDSPPPDETQKANEGVVVMSTSGEIRIDVTEGQDCGGGDDNDGNPRQEHEREHEHEHGYGNHEVMIHQQGEQMFARSHSTGHSIVLIRGEGDEGKDDDKYTLRLPEHVLRVRHNNKHNCTRSCASYKDIAKLVAPPAAAAPCSNCGFVQPVPPSSTSSPDHTRK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00943 315 Pfam Ring finger domain 106 149 IPR001841 -
Gma01g00943 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
Gma01g00943 315 MobiDBLite consensus disorder prediction 180 207 - -
Gma01g00943 315 PANTHER RING-H2 FINGER PROTEIN ATL29 9 281 - -
Gma01g00943 315 SMART ring_2 107 148 IPR001841 -
Gma01g00943 315 MobiDBLite consensus disorder prediction 192 207 - -
Gma01g00943 315 CDD RING-H2_EL5_like 106 149 - -
Gma01g00943 315 PANTHER RING FINGER DOMAIN-CONTAINING 9 281 - -
Gma01g00943 315 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Gma01g00943 315 SUPERFAMILY RING/U-box 98 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00943 Gma-Chr1 31597164 31598111 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00943 21 261 Rapid Response to Elicitors AT2G35000 34.766 3.29e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00943 - - gmx:100815505 594.734