Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00940 ATGGCTGTTGTTGGCAACCCCAGAACTTGGATTCCATATATGAACAGCAAAGACTGTTCTCAAGGATTTTGTAGCTTGTACTGTCCACAATGGTGTTACATTGTGTATCCTCCTCCTCCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCTCCTCTTGTCATTGCAATCATTGGGATCTTGGCCACTGCTTTTCTTGTGGTGAGTTACTACACTCTAATATCCAAGTACTGTGGCCCCAGAGAGTCCGCACGCAGAGACCCAAATGAAGATCACTTGCAAGACAATCAGAACCACAATGACACTCTCCCCGAGCATGATTCAAACACGGGCCTCGACGAGGCTCTGATCAAATCCATTGCGGTCTTCAATTACAAGAAAGGAATTGGTGGTTCTGCTGGAGTCACCGATTGTTCAGTTTGCCTCAGCGAGTTTCAAGATGACGAAAGTGTTAGGCTCTTGCCAAAATGCAGCCACGTTTTCCATGCTCCTTGTATCGACACGTGGCTCAAGTCACACTCTAGCTGCCCCTTGTGTCGTGCTGGCATATTCACTTTCACTTCTTCTCAGGTTGAGGTGGAGGCCCCTTCAACAAACGAAACTTCTCCTGATAATGAAAGTGTAGAAAGTGGCAACGAGTTTGGCGTGGTGGTGCAAGAAGAAGTAGAAGAAAACATGCATCACACTAGAGCGTATCCAAAGCCTGCATTGCGCGCTTTTAGCGACTTGAGTAGCTTTCAGGGCAGGCACAGGGTGATTGAGATTAGAGACGATGGTAGGTCGGTGTCAATGGACCATTCGTTTCAAAATGCTCTTTCTGTTGCTCATGTATTGCAAATGAGTGAAGACGAAGATTCCACTGAAGCTGCAGGTCCTTCAAAGAGGTCGCACGGAGAGAGTAGCAAGTGCATATACAAATCAAGGGTGTTGCATTGTGTGCTGAGCCCAATTGCAATGAAGAGATCGTTTTCCAGTGGAAGATTCTCGGTTAGCAAAAGTGGCATAAGAAGGCATGGAAATGGATCTATACCCATCTGA 1047 0.4642 MAVVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLVVSYYTLISKYCGPRESARRDPNEDHLQDNQNHNDTLPEHDSNTGLDEALIKSIAVFNYKKGIGGSAGVTDCSVCLSEFQDDESVRLLPKCSHVFHAPCIDTWLKSHSSCPLCRAGIFTFTSSQVEVEAPSTNETSPDNESVESGNEFGVVVQEEVEENMHHTRAYPKPALRAFSDLSSFQGRHRVIEIRDDGRSVSMDHSFQNALSVAHVLQMSEDEDSTEAAGPSKRSHGESSKCIYKSRVLHCVLSPIAMKRSFSSGRFSVSKSGIRRHGNGSIPI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00940 348 Pfam Ring finger domain 140 183 IPR001841 -
Gma01g00940 348 SUPERFAMILY RING/U-box 140 190 - -
Gma01g00940 348 MobiDBLite consensus disorder prediction 86 112 - -
Gma01g00940 348 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Gma01g00940 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 187 IPR013083 -
Gma01g00940 348 CDD RING-H2_PA-TM-RING 140 183 - -
Gma01g00940 348 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 337 IPR044675 -
Gma01g00940 348 MobiDBLite consensus disorder prediction 283 303 - -
Gma01g00940 348 SMART ring_2 141 182 IPR001841 -
Gma01g00940 348 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00940 Gma-Chr1 31256326 31257372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00940 1 305 C3H Transcription Factor Family AT3G03550 43.333 1.19e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00940 - - gmx:100817628 698.738