Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00924 ATGGCAAGGATTCCTGACAAGATTAAGTCTATTGATGGGTCAAGAGAGACACTTAAACTTGCTGTGAGAATCATGGATCTTTGGTTCATTGGGACTCCCAACAAGTCTGAGCAAGCGGAAATGGTTACTGCTGATTCTGAGGGTGATCAAATTCATGTTGTTTGTAAAGCGGACCAGCTAAAGTCTTGGAAAGCTTATTTGAAGGAAAATTCCACTTATGTTATGCATAATTTCAAAGTGGTGAAGAATGATGGTCAATTTAGAGTGTGTGAACATGAGTACAAGTTAGTTTTTATTGGAGTGACTGTTGTTAGAGAAGCTTATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTGGAAATGTCGTTGCTGGGATTTTGTGGCTGGCCTGTTGGCTTTTAGATTTAGGTGTTGAGGTCAGCCCAATTTTTCCACCTGGCGATCTAGGAAGTTCACAACTTTCAAGGGCAAGCCAGCTATCATCAAAGGATGCATTTCTTTCAAAATCTGAAGCCAAAACTATTTCCGAGATCAATGGCATTTCTGAGGATGTTGTTTGTGTTACGATGGACACTATTAGCAAAATAGTCGTGGATAATCATTCATGGTGTTATCCAGCTTGTATTCAATGTCATAGAAAAACTTACATCCAAACAGGACCATTCACATGCGGGTGTGGCAAAGATAATGATCAGCCTGTTCTAAGGTATAGAGTTGAAGTAATGGTTAGCCAAAACAATGACAGTAGCAAGTTTTTGTTGTGGGACCGTGAATGTGCTGAATTGATTGGTCAAACAGCTGACGAAGTGAACAGGGTCAAGATTGAAGATGGTGATGTTGATTTGAATGCTTCTCCTCAAGCACTTGATAGGCTGTTGGGTTATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAAATTCAGGAATGCCATTGTTCTTAGATACTTAAATGAATTAGATTTGATCAATGTTGTGCTCGACATGTTGGCTGATACTGAGCAATCTCTGTTTGTGACAGCGAACCATGATCCAGTTGTAGGATTCCCTTTAACGCCCAAAAAATGCCTATCATCTGATGAAGTTGATGATGAGCTAGGAAGCTCCTAG 1116 0.3961 MARIPDKIKSIDGSRETLKLAVRIMDLWFIGTPNKSEQAEMVTADSEGDQIHVVCKADQLKSWKAYLKENSTYVMHNFKVVKNDGQFRVCEHEYKLVFIGVTVVREAYLHELPFKEFRFVEFGNVVAGILWLACWLLDLGVEVSPIFPPGDLGSSQLSRASQLSSKDAFLSKSEAKTISEINGISEDVVCVTMDTISKIVVDNHSWCYPACIQCHRKTYIQTGPFTCGCGKDNDQPVLRYRVEVMVSQNNDSSKFLLWDRECAELIGQTADEVNRVKIEDGDVDLNASPQALDRLLGYVLAFKVRIQSKFRNAIVLRYLNELDLINVVLDMLADTEQSLFVTANHDPVVGFPLTPKKCLSSDEVDDELGSS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00924 371 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 266 - -
Gma01g00924 371 SUPERFAMILY Nucleic acid-binding proteins 7 106 IPR012340 -
Gma01g00924 371 Pfam Domain of unknown function DUF223 40 126 IPR003871 -
Gma01g00924 371 Gene3D - 159 332 IPR012340 -
Gma01g00924 371 Gene3D - 6 106 IPR012340 -
Gma01g00924 371 SUPERFAMILY Nucleic acid-binding proteins 174 312 IPR012340 -
Gma01g00924 371 CDD RPA1_DBD_C 172 306 IPR013955 -
Gma01g00924 371 Pfam Replication factor-A C terminal domain 201 305 IPR013955 -
Gma01g00924 371 PANTHER REPLICATION FACTOR A 1, RFA1 11 266 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma01g00924 371 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00924 Gma-Chr1 29815585 29818089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00924 196 284 Core DNA Replication Machinery Family AT5G61000 30.769 4.44e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00924 - - gmx:102660767 503.056