Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00921 ATGCTGACTAAGTACCTAGCTCCAATTTATACTCATCTCAAATGGGTATTCGATTTTGTTCTCTACTACCCCTTTTACATGCTTTATGATTCTCATCCACCCATAAATCTTGGAACTGAATTGAGTACATTTCATTATGAATTAACCTCTGGCTCAGAGGAACATGTGGATTGTGCTGTGTGTCTAAGCAAATTTGGAGAAAGAGATGAGGTGATTAGAGTTATGAGATGTGAGCATGTCTTCCACAAAGGTTGTTTGGATAGATGGTTGGTTTCAAGAATGCCACGTGTCCTCTTTGCAGAGGATCAGTGA 312 0.3942 MLTKYLAPIYTHLKWVFDFVLYYPFYMLYDSHPPINLGTELSTFHYELTSGSEEHVDCAVCLSKFGERDEVIRVMRCEHVFHKGCLDRWLVSRMPRVLFAEDQ 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00921 103 ProSiteProfiles Zinc finger RING-type profile. 58 89 IPR001841 -
Gma01g00921 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 95 IPR013083 -
Gma01g00921 103 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 2 90 - -
Gma01g00921 103 SUPERFAMILY RING/U-box 57 93 - -
Gma01g00921 103 Pfam Ring finger domain 57 92 IPR001841 -
Gma01g00921 103 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00921 Gma-Chr1 29620233 29620544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00921 41 90 C3H Transcription Factor Family AT4G28890 47.059 1.14e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00921 - K16282 mtr:MTR_0010s0190 91.2781