LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma01g00863	ATGGCTGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCTTGTGATCCTGGAAAGGTTATATGGAAAAGCAATCCTACCAAGCCCTGCCCAAATTGTCAACATGCTATTGACAACGATGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAAATAATTTGGCACTTGCTTGCAAAAGTTGGGGTAGGAGATTCAAAACCTCATCCCTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAGTGCTTCCCACTTCTTCCATAGAGCAATCAACGCTTACAACACCGGCACCCGAAAGCGCCGAAAAATACTAGGGCAAGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGAACTAAACCAGTTGTCTTTAATGGGATTCAAAAAGGCTGTAAAAAGATTATGGTTTTGTATGTTAGCAATGTAAGGGGAGGAAGAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAAGATGAAAAAGATGGAGAGTACATTATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAAGATGATAAAGATGTTCCTGAAGCCACTGAAATCAATGAATCAACAATTGTGAAAGTGGATCCAGTCACTCCCAAATTTGTGACTCCTGAAACTCCTTGTAATGAAAGGTGGTGTGCAGATCTAGACCTTGGACAAGAAACACATAACAGTCCGCAGCTTCCTCAGATGGATTGTTTAGATGAGATTCAAGCTGATTACCAAGACCTTGCAAATGAATCATCTATGGTAGAAACTCAACACAATGAAGGGATGGATGATAAAGAAAAAAATACCGAGGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTCGAGGCACTATCACTGTGTGACGATCTACTCCAAAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAAGAACCAACCCGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAAAATCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGCCCTTGATAAAGCAAATATAGAGAATGATACACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTTCCTGGGGCTATGGCAAGGCAGTGAACTAA	1281	0.4091	MAGTSWLVDKSRIATKIKCASGACDPGKVIWKSNPTKPCPNCQHAIDNDDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSKPHPFIDEFITTLEVDDGICYTHPQNLPGVKQDGSASHFFHRAINAYNTGTRKRRKILGQDFGDVRWHKTGRTKPVVFNGIQKGCKKIMVLYVSNVRGGRAEKTNWVMHQYHLGTEEDEKDGEYIISKVFYQQQQVKLGDKDDKDVPEATEINESTIVKVDPVTPKFVTPETPCNERWCADLDLGQETHNSPQLPQMDCLDEIQADYQDLANESSMVETQHNEGMDDKEKNTEEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPSRDGKHEDHKNQPGLSVYAQLGPENLKKDIEECQNLALDKANIENDTPSEFRLSQLEFGSQDSFISWGYGKAVN	426

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma01g00863	426	MobiDBLite	consensus disorder prediction	348	367	-	-
Gma01g00863	426	ProSiteProfiles	NAC domain profile.	58	216	IPR003441	GO:0003677\|GO:0006355
Gma01g00863	426	Coils	Coil	378	398	-	-
Gma01g00863	426	Gene3D	NAC domain	67	221	IPR036093	GO:0003677\|GO:0006355
Gma01g00863	426	MobiDBLite	consensus disorder prediction	304	321	-	-
Gma01g00863	426	PANTHER	SUPPRESSOR OF GAMMA RESPONSE 1	2	420	-	-
Gma01g00863	426	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	2	420	IPR044799	GO:0003700
Gma01g00863	426	SUPERFAMILY	NAC domain	44	216	IPR036093	GO:0003677\|GO:0006355
Gma01g00863	426	Coils	Coil	284	304	-	-
Gma01g00863	426	Pfam	No apical meristem (NAM) protein	59	197	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma01g00863	Gma-Chr1	27727356	27732103	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma01g00863	14	228	NAC Transcription Factor Family	AT1G28470	51.786	8.08e-72	227

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Gma01g00863		NAM	1.2e-20	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma01g00863	-		-	gmx:100799488	891.723

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma01g00863	01	27727356	27732103	Gma01g00863	01	27727356	27732103	ECH
	Gma01g00863	01	27727356	27732103	Gma02g00910	02	9624084	9630267	GST

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