Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00863 ATGGCTGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCTTGTGATCCTGGAAAGGTTATATGGAAAAGCAATCCTACCAAGCCCTGCCCAAATTGTCAACATGCTATTGACAACGATGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAAATAATTTGGCACTTGCTTGCAAAAGTTGGGGTAGGAGATTCAAAACCTCATCCCTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAGTGCTTCCCACTTCTTCCATAGAGCAATCAACGCTTACAACACCGGCACCCGAAAGCGCCGAAAAATACTAGGGCAAGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGAACTAAACCAGTTGTCTTTAATGGGATTCAAAAAGGCTGTAAAAAGATTATGGTTTTGTATGTTAGCAATGTAAGGGGAGGAAGAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAAGATGAAAAAGATGGAGAGTACATTATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAAGATGATAAAGATGTTCCTGAAGCCACTGAAATCAATGAATCAACAATTGTGAAAGTGGATCCAGTCACTCCCAAATTTGTGACTCCTGAAACTCCTTGTAATGAAAGGTGGTGTGCAGATCTAGACCTTGGACAAGAAACACATAACAGTCCGCAGCTTCCTCAGATGGATTGTTTAGATGAGATTCAAGCTGATTACCAAGACCTTGCAAATGAATCATCTATGGTAGAAACTCAACACAATGAAGGGATGGATGATAAAGAAAAAAATACCGAGGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTCGAGGCACTATCACTGTGTGACGATCTACTCCAAAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAAGAACCAACCCGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAAAATCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGCCCTTGATAAAGCAAATATAGAGAATGATACACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTTCCTGGGGCTATGGCAAGGCAGTGAACTAA 1281 0.4091 MAGTSWLVDKSRIATKIKCASGACDPGKVIWKSNPTKPCPNCQHAIDNDDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSKPHPFIDEFITTLEVDDGICYTHPQNLPGVKQDGSASHFFHRAINAYNTGTRKRRKILGQDFGDVRWHKTGRTKPVVFNGIQKGCKKIMVLYVSNVRGGRAEKTNWVMHQYHLGTEEDEKDGEYIISKVFYQQQQVKLGDKDDKDVPEATEINESTIVKVDPVTPKFVTPETPCNERWCADLDLGQETHNSPQLPQMDCLDEIQADYQDLANESSMVETQHNEGMDDKEKNTEEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPSRDGKHEDHKNQPGLSVYAQLGPENLKKDIEECQNLALDKANIENDTPSEFRLSQLEFGSQDSFISWGYGKAVN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00863 426 MobiDBLite consensus disorder prediction 348 367 - -
Gma01g00863 426 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Gma01g00863 426 Coils Coil 378 398 - -
Gma01g00863 426 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Gma01g00863 426 MobiDBLite consensus disorder prediction 304 321 - -
Gma01g00863 426 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 420 - -
Gma01g00863 426 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 420 IPR044799 GO:0003700
Gma01g00863 426 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Gma01g00863 426 Coils Coil 284 304 - -
Gma01g00863 426 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Gma01g00863 426 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00863 Gma-Chr1 27727356 27732103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00863 14 228 NAC Transcription Factor Family AT1G28470 51.786 8.08e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma01g00863 NAM 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00863 - - gmx:100799488 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00863 01 27727356 27732103 Gma01g00863 01 27727356 27732103 ECH
Gma01g00863 01 27727356 27732103 Gma02g00910 02 9624084 9630267 GST