Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00726 ATGAATCTTAGCTATGAGCAGAGGCTCCAGGTTGTCGCCAGACTCATTCTCGACGAAGACTCACGCCCCGGAGACGCGCCGCTTTACCAGGAGGAGCTTGGGCTGAGGGTGACCCTCAAGCCGCACCAGGTGGAAGGGGTTTCGTGGCTCATACGGAGGTACAAACTCGGTGTCAACGTCGTCCTCGGTGAGACTATAACCCTTTTGATTATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTATGCCGGTTGTCACTTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTACCCCTAAACTCAAAGTCTTCAAATATGTTGGTGATAAAGAATGCAGGCGCAATCTACGCATGAAAATACATGAATATGTAACAGGGCAGTCATCAACACTGAATGTCTTGTTGCCTTTTGATGTGCTGTTAACCTCATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATATCATGGCAGTATGCAATTATTGATGAAGCTCAGAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATTGCTATATAATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAAAACAACCTTTCTGAATTGTGGGCGTTGATGTATTTTTGCATGCCTTCTGTTTTTGGTACACCGGATCAGTTCCTCTCTATGTTTAAGGACATCAGTGATCTTTCACCAGTTCATGATACTCCAAAGGTAAAGGAGAGACTTAAAATTTTGAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAGTCAAAGCTTATCGAGTGTGGAAATTTAGTACTACCACCTCTCACTGTGACAACTGTGTTAGTACCGCTTGTCATCCTGCAGAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCATAAGCTACTTGCACTATCTTTTGGAACTTCAAATCATGAGTCACTACAGAATATTGTGATACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGTCCGAACCGTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTTATTCTGGACCAACTTCTTCAGAAGTTGCATTACTCTGGACACCGGGTTCTCCTTTTTGCTCAAATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAACGTCTTGATGGATCGATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTAATATGGGCTTGAATTCTGAAGCTGACCAAAATGAAGCATTTGTTTTTATAATCTCAACAAGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACACAGAATTGGCCAGATGAACCATGTATTGTGTATAAACCTTGTTACAGAGCGGACAGTGGAGGAA 1542 0.4254 MNLSYEQRLQVVARLILDEDSRPGDAPLYQEELGLRVTLKPHQVEGVSWLIRRYKLGVNVVLGETITLLIMGLGKTLQAISFLSYLKVCRLSLGPFLVICPLSVTDGWVSEIVKFTPKLKVFKYVGDKECRRNLRMKIHEYVTGQSSTLNVLLPFDVLLTSYDIALMDQDFLSQISWQYAIIDEAQRLKNPSSVLFNVLKDCYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTPDQFLSMFKDISDLSPVHDTPKVKERLKILRSVLGAFMLRRTKSKLIECGNLVLPPLTVTTVLVPLVILQKKVYMSILRKELHKLLALSFGTSNHESLQNIVIQLRKACSHPYLFPGIESEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANMGLNSEADQNEAFVFIISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTVEE 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00726 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 278 IPR027417 -
Gma01g00726 514 Gene3D - 19 288 IPR038718 -
Gma01g00726 514 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 375 514 IPR001650 -
Gma01g00726 514 SMART ultradead3 35 244 IPR014001 -
Gma01g00726 514 Pfam SNF2-related domain 71 351 IPR000330 GO:0005524|GO:0140658
Gma01g00726 514 CDD SF2_C_SNF 364 507 - -
Gma01g00726 514 PANTHER HELICASE CHR10-RELATED 3 514 - -
Gma01g00726 514 SMART helicmild6 401 496 IPR001650 -
Gma01g00726 514 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 3 514 - -
Gma01g00726 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 514 IPR027417 -
Gma01g00726 514 Gene3D - 289 514 IPR027417 -
Gma01g00726 514 Pfam Helicase conserved C-terminal domain 372 496 IPR001650 -
Gma01g00726 514 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 233 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00726 Gma-Chr1 16539209 16569923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00726 71 514 RAD5 or RAD16-like Gene Family AT1G02670 24.725 1.57e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma01g00726 SNF2_N 3.5e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00726 K20092 - gmx:100797182 970.304