Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00653 ATGGGAAGATCTCCATGTTGTGATGAAATTGGCTTGAAGAAAGGTCCTTGGACACCTGAAGAAGATCAAAAGCTTATTGACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCTCTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGTAGGTTAAGGTGGACGAACTACTTGAGGCCTGATATTAAAAGAGGGAAATTTTCCCAAGAAGAAGAACAAACAATTCTGGATCTCCATGCTGTCCTTGGAAACAAATGGTCTGCAATAGCAAGTCACTTACCGGGTCGGACAGATAATGAAATCAAGAATTTTTGGAACACCCATCTCAAGAAGAAGCTGATTCAAATGGGATATGATCCAATGACACACCAGCCTCGAATTGATGATATCTTCACAGGCTTGTCCCATCTCATAGCACTGGCTAACCTCAAAGAACACTTGGACCATCTTCACCAACACCAACCATGGGAACAAAACCTTGCAAGGCTTCAGGAATTGGCCAGGCTCCAATGCTTGCAGCAACACCTCTTGCTGCTACAAGCTTCATTAACTGATGCAGATCCTAACACAATTGATAGCATAATAAACAGTACCTTCATGAACAAGGACACCATCAATGTTTCAAATGATCAATTTGAGAACATTATTATGTCATCTAATGGTACCATGCCTTTCTATCACATGCCTGAATTGAAAACACATCCTTGTTCATATGAAGCACCAATAAGTAATAAGGACATGGTTCAATTTTCTCGAGGAGAAAGTTATCCCAATTCTCCATGGCTTCTTTCATGTTCAAGCACTATACCTTCTTCTCCTTCTTCCCTTGTGGCTCCACCTGTGACGGAGATTTCATTGACTAATGTGGAAGATAATTGCACTATTTGGCCGGAGCTCCTACTAGAGGACCCTTTGTTCAAAATGATTTCCTAG 942 0.4151 MGRSPCCDEIGLKKGPWTPEEDQKLIDHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILDLHAVLGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRIDDIFTGLSHLIALANLKEHLDHLHQHQPWEQNLARLQELARLQCLQQHLLLLQASLTDADPNTIDSIINSTFMNKDTINVSNDQFENIIMSSNGTMPFYHMPELKTHPCSYEAPISNKDMVQFSRGESYPNSPWLLSCSSTIPSSPSSLVAPPVTEISLTNVEDNCTIWPELLLEDPLFKMIS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00653 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma01g00653 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma01g00653 313 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma01g00653 313 SMART sant 66 114 IPR001005 -
Gma01g00653 313 SMART sant 13 63 IPR001005 -
Gma01g00653 313 CDD SANT 69 112 IPR001005 -
Gma01g00653 313 CDD SANT 16 61 IPR001005 -
Gma01g00653 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma01g00653 313 Gene3D - 11 67 - -
Gma01g00653 313 Gene3D - 69 116 - -
Gma01g00653 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma01g00653 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Gma01g00653 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma01g00653 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma01g00653 313 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00653 Gma-Chr1 11447101 11448468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00653 1 312 MYB Transcription Factor Family AT5G10280 50.000 3.96e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g00653 Myb_DNA-binding 3.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00653 K09422 - gmx:100785374 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00653 01 11447101 11448468 Gma02g01131 02 12424492 12426378 GST