LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma01g00623	ATGTTGGTTGCTTCTAAACAACCTACTTCTAGTGCATCTGTGCGCTCACCAGAGCTTGACCCTTATTCCGCCACTAACACTCTTATTGCCTTTGATAAACATCACCAAAAGTTCATTCTGGGCCCTTGCTTTCTTAATGATGGCGAAAATACTGATAAAACGGCTAACAAGCCGTTTAATCATGAGAAAAATCCTTTTCCAATCACTTCCATCGATATGCACTGGCCACAGGATGTATGGGTCAAAATCTTAGGGTTTTGGTCGATAGCTATCAAGGGGTTCATGCTTCCAAAAGCTATGGCTGGCTTGACTCTTCTAAATGTAGTGGCTATTCTTAACTTATCGATTCATGtttcttgtgccaacaaacaaccgatggagttttcagctgctgatgcatataattttagacaagcttcttctattggagcccaactattaatcaaatttggtggcaaacttgaataccacgtgaatgtcatgctgGATTTTGGCGTGAGGCTGTGGTTTCCAGTTCGTGATTTTCGTTCTTCTGTGGTTGAAGAATTGGCAGGTCTATGTAATTTTATGGCAAGGATTCCTGACAAGATTATGTCTATTGATGGATCAAAAGAAACGCTTAAGCTTGCTGTTAGGATCACCGATCCTTGGTTCGTTGGGACTCCAAACAAGTCTGAGCAAGCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGGTGTTAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGATGGTTGTTAGAGAAGATGATTTGCATGAACTACCTTTTAAGGAATTTAGATTTGTTGAATTTCCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGCTGGTTGATATTATTGGGGTCGTTGATCAAGTGGTCTTTCGGCATGTTTCATCGAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGCATTACTGTGCTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTGTTATATTGACGCATGCCAGAATAAAAGATGCACAGGGTAATTATCCAACTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTAGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGTGATCAAGCAAGCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGATGTTGTTTGTGTTACCATGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGATCATTCACATGTGGATGTGGCAAGGATAATGATCATCCTGTTCTAAGGTATAGAGTTGAGGTCATGGTTACACAAAACAATGAGAGTGGCAAATTTTTGCTTTGGGACCGTGAATGTGCTGAATTGATTGGCCAAACAGCTGATGGTGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAGATTCAAAAATGTAATTGTacttaaatactcaaaagaacttaaatactcaaaagaCCAGGATTTGATCAATGTTGTTCTGGAGATGCTGCCTGATAGTGAGCAATTTCTGTCTGCCACAACTGACCATGATCCGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATGTCATCTGATGAAGCCGATGATGAGTTAGGGAGCTCTCAAATTTCGCCAGCCCAGCTATCGTCTAACAAATTAACAAGACATTCTCATAGGAGCTAA	2067	0.3701	MLVASKQPTSSASVRSPELDPYSATNTLIAFDKHHQKFILGPCFLNDGENTDKTANKPFNHEKNPFPITSIDMHWPQDVWVKILGFWSIAIKGFMLPKAMAGLTLLNVVAILNLSIHVSCANKQPMEFSAADAYNFRQASSIGAQLLIKFGGKLEYHVNVMLDFGVRLWFPVRDFRSSVVEELAGLCNFMARIPDKIMSIDGSKETLKLAVRITDPWFVGTPNKSEQAEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKGVKNDGQFRVCEHEYKLFFIGVMVVREDDLHELPFKEFRFVEFPNVVAGNFVSGLLVDIIGVVDQVVFRHVSSKNTRVVFRMKDLSGEILSCTLWEHYCAQFLSYLNERGDDGPMVVILTHARIKDAQGNYPTSVSNSFKASKLLINDPILEIQEFKERLLDLGVEVSRVLLPGDQASSQVSGGSQLSSKDSFLSKAEAKTILEINAISEDVVCVTMGTISKIVMDNHSWCYPACAQCHRKTDIQTGSFTCGCGKDNDHPVLRYRVEVMVTQNNESGKFLLWDRECAELIGQTADGVNRVKIEDGDLDLNASPQALDKLLGHVLAFKVRIQSRFKNVIVLKYSKELKYSKDQDLINVVLEMLPDSEQFLSATTDHDPVAGLPLTPKKRMSSDEADDELGSSQISPAQLSSNKLTRHSHRS	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma01g00623	688	CDD	RPA1_DBD_B_like	326	428	-	-
	Gma01g00623	688	CDD	RPA1_DBD_C	464	614	IPR013955	-
	Gma01g00623	688	MobiDBLite	consensus disorder prediction	641	688	-	-
	Gma01g00623	688	Pfam	Replication factor-A C terminal domain	486	599	IPR013955	-
	Gma01g00623	688	SUPERFAMILY	Nucleic acid-binding proteins	468	615	IPR012340	-
	Gma01g00623	688	SUPERFAMILY	Nucleic acid-binding proteins	307	428	IPR012340	-
	Gma01g00623	688	CDD	RPA1_DBD_A_like	208	287	-	-
	Gma01g00623	688	Gene3D	-	300	434	IPR012340	-
	Gma01g00623	688	Pfam	Domain of unknown function DUF223	229	316	IPR003871	-
	Gma01g00623	688	SUPERFAMILY	Nucleic acid-binding proteins	209	289	IPR012340	-
	Gma01g00623	688	PANTHER	RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED	200	571	-	-
	Gma01g00623	688	Gene3D	-	448	622	IPR012340	-
	Gma01g00623	688	Gene3D	-	195	295	IPR012340	-
	Gma01g00623	688	MobiDBLite	consensus disorder prediction	664	681	-	-
	Gma01g00623	688	PANTHER	REPLICATION FACTOR A 1, RFA1	200	571	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma01g00623	Gma-Chr1	10234920	10251491	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma01g00623	190	576	Core DNA Replication Machinery Family	AT5G08020	23.250	2.62e-13	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma01g00623	-		-	gmx:102666776	807.749