Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00602 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGTTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGCACGGCCAAGACACTTGAACGGTATCACAGATGCAGTTATGGAGCCTTGGAAGTCCAGCACCAACCTGAAATAGAGACACAGAGGCGCTACCAAGAGTACCTAAAGCTAAAATCCAGAGTTGAGGCACTACAGCAAACACAAAGAAACCTCCTTGGGGAAGAATTGGAGCACTTAGACGTTAACGACCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCCTTGAAGCAAATCAGGTCTAACAAGACACAGCAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTACTGGAAACTAACAATATCCTGAGAAACAAGTTGGAGGAAATCAATGTAGCCCTACAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAATTGCCACCCTCCCCAAACAGAGGGATATTATGAGACAGCAACAGCACATTGCAGCAGTACATTGAGAATTGGCTATGATTCTTCAGGATTAAATGAAGCAGGAGGAGCTGCAGGAGCCTCAGCCCAAAATGCTAGTGAATTCATGCATGGATGGATGAACTAA 741 0.4602 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGHSTAKTLERYHRCSYGALEVQHQPEIETQRRYQEYLKLKSRVEALQQTQRNLLGEELEHLDVNDLEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILRNKLEEINVALQPTWEAREQNAPYNCHPPQTEGYYETATAHCSSTLRIGYDSSGLNEAGGAAGASAQNASEFMHGWMN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00602 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma01g00602 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 232 - -
Gma01g00602 246 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Gma01g00602 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gma01g00602 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma01g00602 246 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gma01g00602 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma01g00602 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma01g00602 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma01g00602 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma01g00602 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma01g00602 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma01g00602 246 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma01g00602 246 PANTHER MADS BOX PROTEIN 1 232 - -
Gma01g00602 246 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00602 Gma-Chr1 9549127 9562614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00602 1 217 MADS-box Gene Family AT5G15800 63.677 1.94e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma01g00602 K-box 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00602 K09264 - gmx:100813520 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00602 01 9549127 9562614 Gma01g00602 01 9549127 9562614 ECH
Gma01g00602 01 9549127 9562614 Gma02g01102 02 12062446 12074332 GST