Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00587 ATGGCGGCCCGAGCTTCAAGGCTTGAGAATCAAGATGCAATTGATACAGCCATAGTTGGGATATTGGCTGATCCAAAGGAGGCACGTGCTGGCATACAAGAAGTACATTTTCTTCCTTTCAATCCTAGTGATAAGTGGACGACATTGACTTATCTTGATCAAGATGGCAAAATGCATAGAGTAAGCAAAGGTGTACCAGAACAGATCCTGAATCTTGCACACAATAAGGAAAACATTGAACGTAGAGTTCATTCAGTGATAAAGTTTGCAGAGCGTGGTTTACGATCTCTTGTTGTAGCATACCAAGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGCCCGTGGCAATTTATTGGCCTTTTGTCTCTCTTTGACCCACCTAGGCATGATCGTGCAGAAACAATACGAAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTATAGCTGTTGCACCTGCCCTCAAGAAGGCAGACATTGGTATAGCTGTTGTTGATGCTACTGATGCAGCCCGAAGTGCATCTGATATTGTTCTAACAGAACCTGGACTTAGTGTTATTATTAGTGTTGTTTTGACAAGCCGAGCTATCTTCCAGAGAATGAAAAATTATATAGTAAGCTAA 627 0.4211 MAARASRLENQDAIDTAIVGILADPKEARAGIQEVHFLPFNPSDKWTTLTYLDQDGKMHRVSKGVPEQILNLAHNKENIERRVHSVIKFAERGLRSLVVAYQEVPDGRKESAGGPWQFIGLLSLFDPPRHDRAETIRRALNLGVNVKMIIAVAPALKKADIGIAVVDATDAARSASDIVLTEPGLSVIISVVLTSRAIFQRMKNYIVS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00587 208 PANTHER CALCIUM-TRANSPORTING ATPASE 153 207 - -
Gma01g00587 208 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 9 131 IPR023299 GO:0000166
Gma01g00587 208 PANTHER PLASMA MEMBRANE ATPASE 1 150 - -
Gma01g00587 208 Gene3D - 184 207 - -
Gma01g00587 208 PANTHER PLASMA MEMBRANE ATPASE 153 207 - -
Gma01g00587 208 PANTHER CALCIUM-TRANSPORTING ATPASE 1 150 - -
Gma01g00587 208 SUPERFAMILY HAD-like 153 205 IPR036412 -
Gma01g00587 208 Gene3D - 126 149 IPR023214 -
Gma01g00587 208 Gene3D - 153 183 IPR023214 -
Gma01g00587 208 Gene3D - 1 125 IPR023299 GO:0000166
Gma01g00587 208 PRINTS P-type cation-transporting ATPase superfamily signature 17 28 - -
Gma01g00587 208 PRINTS P-type cation-transporting ATPase superfamily signature 146 165 - -
Gma01g00587 208 PRINTS P-type cation-transporting ATPase superfamily signature 169 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00587 Gma-Chr1 9140498 9141611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00587 153 207 Primary Pumps ATPases AT5G62670 92.727 3.59e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00587 K01535 - gmx:100802859 276.559