LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma01g00561	ATGACCTGGAGATTAACTCTAGCAGAGGTTAGGCATGTATTGGGTCTGCTAGTTGATTTTAAACTAGAAGCAATAGCTGCTGTGAAGTTGTACAAGAATTATATTATCATAAAAGGGTGCTCTGAGAAGAAACGACCTTCTCCACCTTACATTTTGTGGATGAAAGACCAACGGAATGAGATCAAGAAAGTGAACCCAGAGGCCGGATTTAAGGAAATTTCAACCATGCTAGGTGTTAAATGGAAGACTGTTACTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACATGAAACTGAGTCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGGCCATTTCATGAAGGAAGAGGAGGACCATATGAAAGTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAATTGAAAATATAATCAATATGTCAGCAATGGAAAGGGTGGGGCTAATGTGGTGCAATGGGTGGAAACTGCAATCTCTGAGGGAAGGGAATCATAAGTGCTTGATCCTAAGATTGCAGGCTCTAGGAATTGGCTTGCTGAGATGGAGCAACTCCTCCTCATTGGTGCTGCTTGCACTGAAAGTAACCCTCAGCAGCGGTTAG	978	0.4172	MTWRLTLAEVRHVLGLLVDFKLEAIAAVKLYKNYIIIKGCSEKKRPSPPYILWMKDQRNEIKKVNPEAGFKEISTMLGVKWKTVTAEEKKPYEGIYHAEKEAYLQVIAKEKHETESMRLLEDEQKQRTAMELLEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALAAENKNFLEVPKITFEEWKNMTEEQKRPYEEMAKKNKEQYALEMEAYKQKKDEEAGHFMKEEEDHMKVQKQEALQLLKKKEKIENIINMSAMERVGLMWCNGWKLQSLREGNHKCLILRLQALGIGLLRWSNSSSLVLLALKVTLSSG	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma01g00561	325	MobiDBLite	consensus disorder prediction	141	160	-	-
	Gma01g00561	325	Pfam	HMG (high mobility group) box	44	105	IPR009071	-
	Gma01g00561	325	Pfam	HMG (high mobility group) box	159	225	IPR009071	-
	Gma01g00561	325	Gene3D	High mobility group box domain	142	234	IPR036910	-
	Gma01g00561	325	CDD	HMGB-UBF_HMG-box	159	222	-	-
	Gma01g00561	325	Coils	Coil	207	227	-	-
	Gma01g00561	325	CDD	HMGB-UBF_HMG-box	44	108	-	-
	Gma01g00561	325	PANTHER	HIGH MOBILITY GROUP B PROTEIN 13	38	268	-	-
	Gma01g00561	325	PANTHER	HIGH MOBILITY GROUP B PROTEIN 13	38	268	IPR044601	GO:0003677
	Gma01g00561	325	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	159	225	IPR009071	-
	Gma01g00561	325	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	43	111	IPR009071	-
	Gma01g00561	325	SMART	hmgende2	42	112	IPR009071	-
	Gma01g00561	325	SMART	hmgende2	158	226	IPR009071	-
	Gma01g00561	325	SUPERFAMILY	HMG-box	146	230	IPR036910	-
	Gma01g00561	325	Gene3D	High mobility group box domain	40	121	IPR036910	-
	Gma01g00561	325	MobiDBLite	consensus disorder prediction	141	162	-	-
	Gma01g00561	325	Coils	Coil	236	263	-	-
	Gma01g00561	325	SUPERFAMILY	HMG-box	36	107	IPR036910	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma01g00561	Gma-Chr1	8488327	8490918	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	HMG	Gma01g00561		HMG_box	1.2e-14	CL0114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma01g00561	K09273		-	gmx:100781995	480.715