Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00539 ATGGCGTCGCAAATGGCGATCCTCTTCCGCACGCGCACCCTCCTCTCTTCGAAACCCACCACCACCACCCTCATCAAAACCATAACCACATTCCCCTTCCTCTCACAAGAGCCCCAATTAGTGGACTCCACCCCACCACCTTCTTCCTCAACCACCCCTCTCCCTCCCAACCCCGCCTCCGGAAGCCCCCTCTACAACGAAAACTGGCGCAGCCCAATCCCGCCGCCACCGCCCGCTTCCTCCGCCGCCACCTCCCACGCGCTCGCCCCCGTGGGCTTCTACAACCGCGCCACGTCGGAAACATACGACCCCCGCGCCCTCCTCGACCTCTTCGGCGACTGGATGGCCTCGCAGCAGTGGCACGACGTCAAGTTCCTTTTCGAGGCCTGGGTCCGCTCCCTCGATAAGACGGGCAAACCAAACAAGCCCGATGTTAATCTGTTTAATCACTACCTCCGCGCCAACCTTATGCTCGGCGCCTCCGCCGCCGAGCTCCTCGACCTTGTCGCGCAGATGGCGGAGTTCGACGTCGCCCCCAACACCGCGTCGTTCAACCTCGTCCTCAAGGCCATGTGCCAGGCCAAGGAAACCCTCGCCGCTGACAAGCTCCTCCAACGGATGCTGCAGTCAGGAAATGATGCTCTCCCTGATGATGAATCGTATGACTTAGTCATCGGAATGCTCTTTTCCATGGACCAGATTGACACTGCATTCAAATATATAGATTTAATTTTGAAATCTGGTAATGTGTTGTCAATGAAGGTTTTTATGAACTGTGCGGGCAGTTGTGTCAATAAGGGAAGGCTTGATACATTGGTGACAATAATTGAAAGGTGCAGGGCATCAGATCAAAACAAAGCTCTTTGCCCCAACTGGGACTTGTGCAATTTTATTGTTGAAATTGCAACTCGGGAGGATAATAGCAAATTAGCTTTTTATGGCCTGGAGTTTATGGCTAAATGGATTGTAAAGGGTGAACGTCAAAGACCTCCTATATATATTTCTGTAGATGAAGGTTTAGTTCTGTCAGCTCTTTTGACTGCTGGTAGAACCTATAACACTGACCTGCTAGTGGCATCATGGGCTGTTTTGGATCGCTCATTGCGTAAAAAGAAAGCTCCTAATCCAGAGTCATATCTTGGAAAGATATACGCACATGCATCATTGGGGAATCTACAAAAGGCTTTTGGTACTCTGAATGAATATGAGTCAGCTTATGGGGACTCTGGTCAAGAAGCTGAAGACTTGTTCTGCCCATTTACTTCGTTACATCCATTGGTTGTGGCATGCTCCAAGAAGGGTTTTGAGACTCTAGATAATGTTTATTTTCAACTGGAGAATTTAAACCGTGCAGAGCCTCCTTATAAATCTGTAGCTGCACTAAACTGCGTCATTTTAGGATGTGCAAACATATGGGACCTTGATCGTGCTTACCAAACTTTTGAATCAATTGGATCTACTTTTGGGTTGATCCCTGATATTCATTCATACAATGGGTTGATATATGCCTTTGGGAAGCTCAAGAAGACACATGAAGCTACAAGGGTGTTTGAGCACCTAGTGAGTTTGGGTCTGAAGTCTAATGCAAAATCATATTCTCTACTTGTTGATGCCCACCTCATTAACCGGGATGTCAAATCTGCTCTGGCAGTGATTGATGATATGAGAGCTGCTGGATATGAACCATCAAAAGAGATGCTAAAAAAGGTCAGACGGCGATGCACACGAGAAATGGACAATGAAAGTGATGCCAGAGTGCAATCACTGGCTAATTCCTTGAATTACCAATTGGGTTCAGAAAACCGACGGGACATTCTGTTTAATCTTAATTACAGTATGGGTTATGCTTGA 1851 0.4803 MASQMAILFRTRTLLSSKPTTTTLIKTITTFPFLSQEPQLVDSTPPPSSSTTPLPPNPASGSPLYNENWRSPIPPPPPASSAATSHALAPVGFYNRATSETYDPRALLDLFGDWMASQQWHDVKFLFEAWVRSLDKTGKPNKPDVNLFNHYLRANLMLGASAAELLDLVAQMAEFDVAPNTASFNLVLKAMCQAKETLAADKLLQRMLQSGNDALPDDESYDLVIGMLFSMDQIDTAFKYIDLILKSGNVLSMKVFMNCAGSCVNKGRLDTLVTIIERCRASDQNKALCPNWDLCNFIVEIATREDNSKLAFYGLEFMAKWIVKGERQRPPIYISVDEGLVLSALLTAGRTYNTDLLVASWAVLDRSLRKKKAPNPESYLGKIYAHASLGNLQKAFGTLNEYESAYGDSGQEAEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENLNRAEPPYKSVAALNCVILGCANIWDLDRAYQTFESIGSTFGLIPDIHSYNGLIYAFGKLKKTHEATRVFEHLVSLGLKSNAKSYSLLVDAHLINRDVKSALAVIDDMRAAGYEPSKEMLKKVRRRCTREMDNESDARVQSLANSLNYQLGSENRRDILFNLNYSMGYA 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00539 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Gma01g00539 616 MobiDBLite consensus disorder prediction 36 84 - -
Gma01g00539 616 Pfam PPR repeat 496 525 IPR002885 -
Gma01g00539 616 Pfam PPR repeat 531 559 IPR002885 -
Gma01g00539 616 Pfam PPR repeat 183 211 IPR002885 -
Gma01g00539 616 PANTHER OS07G0599000 PROTEIN 1 616 IPR044605 -
Gma01g00539 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Gma01g00539 616 Gene3D Tetratricopeptide repeat domain 116 326 IPR011990 GO:0005515
Gma01g00539 616 Gene3D Tetratricopeptide repeat domain 339 604 IPR011990 GO:0005515
Gma01g00539 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Gma01g00539 616 TIGRFAM PPR: pentatricopeptide repeat domain 531 563 IPR002885 -
Gma01g00539 616 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
Gma01g00539 616 TIGRFAM PPR: pentatricopeptide repeat domain 183 211 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00539 Gma-Chr1 7777685 7784036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00539 361 563 Glycosyltransferase AT1G05670 22.439 1.19e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00539 - - gmx:100784647 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00539 01 7777685 7784036 Gma01g00539 01 7777685 7784036 ECH
Gma01g00539 01 7777685 7784036 Gma02g01059 02 11515585 11521546 GST