Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00511 ATGTATTTGCAGCAAAGTTTGTCTCCAACAAGAGAAACGAGAAATCTTACATTTGATTTTCAGGGTGAAAAAAAAAATCAGGGAGAGAAGAAAACGATGGAGATGGAAGTAGACACCGAGAAGAAGCAACAAGACGTGGTGAAAGAGAAGGACTTATTCAAAGCCGCTGAAGAGGGTGACATGTCAACGTTCGAAGCACACTCCTCTGAAACCCTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGCTCCCTCCTCCACGTTGCAGCTTCTTCCGGCCACTCCCAGGTAGTGAAGATGCTATTGTCTTGTGATGCGTCTGTTGGTGTGGTGAATTGTGCCGACGAGGAAGGGTGGGCGCCGCTTCACTCTGCAGCCAGCATTGGGAGTGTGGAGATAGTGGAGACTCTATTGAGCAAAGGAGCTGATGTTAACCTGAAAAATAATGGGGGCCGCACTGCTCTACACTATGCTGCCAGCAAAGGTTGGGTGAAGATCGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGGTTGCACTCCATTGCATCGGGCAGCTAGCACTGGGAAATCTGAGCTGTGTGAATTTTTGATTGAAGAAGGAGCAGAGGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAATGCTGTGATTTGCTATAACAAAGAGGTAGCCCTTCTTCTGATAAGACATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACAGTGCTTGGTCGAGCCACACATGAGTTTAGACCAATATTAATTGATGCTGCCAAGGCCATGCTTGAGTGA 828 0.471 MYLQQSLSPTRETRNLTFDFQGEKKNQGEKKTMEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAASSGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGGRTALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSELCEFLIEEGAEVDAVDRAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRATHEFRPILIDAAKAMLE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00511 275 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Gma01g00511 275 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Gma01g00511 275 Pfam Ankyrin repeat 218 248 IPR002110 GO:0005515
Gma01g00511 275 ProSiteProfiles Ankyrin repeat profile. 82 114 IPR002110 GO:0005515
Gma01g00511 275 MobiDBLite consensus disorder prediction 1 16 - -
Gma01g00511 275 Gene3D - 186 273 IPR036770 -
Gma01g00511 275 SMART ANK_2a 151 180 IPR002110 GO:0005515
Gma01g00511 275 SMART ANK_2a 184 213 IPR002110 GO:0005515
Gma01g00511 275 SMART ANK_2a 118 147 IPR002110 GO:0005515
Gma01g00511 275 SMART ANK_2a 217 246 IPR002110 GO:0005515
Gma01g00511 275 SMART ANK_2a 82 111 IPR002110 GO:0005515
Gma01g00511 275 MobiDBLite consensus disorder prediction 1 43 - -
Gma01g00511 275 Pfam Ankyrin repeats (3 copies) 79 149 IPR002110 GO:0005515
Gma01g00511 275 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Gma01g00511 275 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Gma01g00511 275 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Gma01g00511 275 SUPERFAMILY Ankyrin repeat 46 259 IPR036770 -
Gma01g00511 275 Pfam Ankyrin repeats (many copies) 152 205 IPR002110 GO:0005515
Gma01g00511 275 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Gma01g00511 275 ProSiteProfiles Ankyrin repeat region circular profile. 82 113 - -
Gma01g00511 275 PANTHER MYOTROPHIN 79 185 - -
Gma01g00511 275 PANTHER MYOTROPHIN 111 259 - -
Gma01g00511 275 ProSiteProfiles Ankyrin repeat region circular profile. 217 249 - -
Gma01g00511 275 ProSiteProfiles Ankyrin repeat profile. 217 249 IPR002110 GO:0005515
Gma01g00511 275 MobiDBLite consensus disorder prediction 17 43 - -
Gma01g00511 275 PANTHER MYOTROPHIN 111 259 - -
Gma01g00511 275 PANTHER MYOTROPHIN 79 185 - -
Gma01g00511 275 Gene3D - 19 185 IPR036770 -
Gma01g00511 275 PRINTS Ankyrin repeat signature 83 98 IPR002110 GO:0005515
Gma01g00511 275 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00511 Gma-Chr1 7288224 7291535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00511 55 241 Miscellaneous Gene Families AT1G07710 37.113 4.46e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00511 K06694 - gmx:100499930 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00511 01 7288224 7291535 Gma01g00511 01 7288224 7291535 ECH
Gma01g00511 01 7288224 7291535 Gma02g01042 02 11302835 11306612 GST