Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00487 ATGGAAGAGACAGATGAGTCAACCAATGCTAACCAGAAATTCGCCATCAAAAGAAGGAGCTTCAGGAATGGAGGCAACTCtcatgagcatcatcattatcaccatcatcaccaccaccaccaccatcatcatcactatcagcaccaccatcatcatcagctgctacaatACTCAAATCAGCTTGGTTTCTGCAACAACCAGAACAAGTTTCAGAGATACTACCCAGCTCTTCTGCCTCTACCTTCTCTTATACCTCTTCAACAACTTCCTTTGACTCCACCCTTCCCTCAGAACCACACTATCAAATCAAAAACCCATTTGCACAAACCTCCATGCATGCTCAATAGCTCCCCCTCCTCAGATTACAAGCTCTCTCAACTACCACTTAATCCTGCTCCAAAAGAACTTCAGCAGCAATCAAAGGCATCCTTGAAAGGAGATGATGGGAAGAAACTCATTCCAGCAAGGAAGCCACATGCAGTACTTGTTGCAAGTAGGCCAGACTCTGGTGGCAGAGAAGGCTCTGTGATCTCTCTTCTTGCCAACCACTTTTTGGTGCAATTTGATCCATCACAGAAGATATATCATTACAATGTTGAAATCACTCCTCATCCCTCCAAGGATGTTGCCAGAGCAATCAAGCAGAAGTTGGTAAATAACAATTCTGCAGTCCTCTCAGGTGCTACTCCAGCATATGATGGTAGAAAGAATCTTTATAGTCCAGTTGAATTCCAAAATGACAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAGTTGAATTCACCTTATGGAGAAATGCCTGATTTGAAAGAGAAGCATGAACAGCTTAAACTTTTCAGGATAAATGTCAAGTTGGTCTCAAAGATCAATGGGAAGGAGTTGAGTAATTACTTGAGCAACGAGGGTGATGATTGGATTCCACTTCCACAGGATTATCTGCATGCTTTGGATGTAGTTCTTAGGGAAAGTCCAACTGAGAAATGCATACCTGTAGGGAGGTCATTCTATTCAAGTTCAATGGGAAGAAGCAAAGACATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCAACACAACAAGGACTTGCTCTCAATGTGGATTTCTCGGTAACTGCTTTCCATGAGAGCATAGGAGTGATTGCATACTTGCAGAAGCGCGTCGAGTTTCTTCGAGACCTGTCTCAAAGGAAGACAGCTCAATTAACTGGCGAAGAGAGGAAGGAAGTGGAGAAGGCGTTGAAGAGCATCAGGGTCTTTGTTTGCCACAGAGAAACTGTTCAGCGATATCGTGTCTATGGCTTGACTGAGGAGGTTACTGAAAATCTTTGGTTTGCTGACAGAGATGGGAAGAATCTGAGGTTGGTGAATTACTTTAAAGATCAATATAACTATGACATACAATTCAGAAAACTGCCATGCTTGCAAATTAGTAGGAGTAAGCCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGGAAACTGTCTGATGATCAAACAGCAAGAATACTCAAAATGGGCTGCCAAAGACCGGCAGAACGAAAAACCATTGTCGAAGGAGTCATGAGAGGAACTGTTGGGCCTACCAGTGGTGATCAGGAAAAAGAATTCAAACTCCAAGTATCAAGAGAAATGACAAAGTTGACTGGTAGAATTCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTAAGAAATCTGACTCCTTCGCGTCACGACCGCCAATGGAACCTTCTTGACGGCCATGTCTTTGAAGGAACTACTATTGAAAGGTGGGCACTAATTAGTTTTGGGGGCACACCTGAGCAGAAGTCCAATGTCCCCAGATTTATAAACCAGTTATGTCAAAGGTGTGAACAATTGGGCATTTTTCTCAACAAGAACACTGTTATTAGTCCCCAGTTTGAATCTATCCAAATTCTTAACAATGTCACCCTTTTGGAATCTAAGCTCAAGAGAATCCAGAGGACAGCCTCAAACAATCTCCAGCTTCTTATTTGCATAATGGAGAGAAAACACAAAGGGTATGCTGACTTGAAGCGAATTGCCGAGACAAGTGTTGGTGTCATGAGCCAATGCTGCCTGTACCCCAACCTCAACAAGTTGAGTTCACAATTTTTGGCTAATTTGGTCCTCAAAATCAATGCCAAAGTTGGTGGATGCACAGTTGCCTTATACAACTCATTGCCTTCGCAGTTACCGCGCCTCTTTCATATTGATGAGCCAGTGATATTCATGGGTGCTGATGTGACACATCCTCACCCTCTTGATGATGTCAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCGACAGCAAACAAGTACATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATCATCCAGGATCTCGGTGCAATGGTGGGGGAATTGCTTGATGATTTTTACCAGGAGGTAGAGAAACTCCCCAATAGAATCATTTTCTTCAGAGACGGGGTTAGTGAAACTCAGTTTTACAAAGTGCTGGAAGAGGAACTTCAATCCATCAGGTTTGCATGTTCAAGGTTTCCTGGCTACAAACCTACCATTACTTTTGCAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCCTTTGAAACTGACCAGTCTTCAACTCAAAACAATTTTCTATATGAAAACATTCCTCCTGGGACTGTGGTTGATTCTGTGATCACTCATCCAAAGGAATTTGACTTCTATCTTTGTAGCCATTGGGGTGTTAAAGGAACAAGTAGGCCAACTCACTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAACTACAGAAACTGGTTTACAACTTATGCTACACTTTTGTTAGGTGTACCAAGCCAATTTCTTTGGTGCCTCCTGCATATTATGCACACTTAGCTGCATATAGAGGCAGACTCTACCTTGAGAGATCAGAGTCCTTAGGTTTGTTCCGAAGCACATCTACACTATCCAGAGCTGCTCCTCCAAAGACAGCAGCTCTACCTAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTATTGCTAG 3090 0.4172 MEETDESTNANQKFAIKRRSFRNGGNSHEHHHYHHHHHHHHHHHHYQHHHHHQLLQYSNQLGFCNNQNKFQRYYPALLPLPSLIPLQQLPLTPPFPQNHTIKSKTHLHKPPCMLNSSPSSDYKLSQLPLNPAPKELQQQSKASLKGDDGKKLIPARKPHAVLVASRPDSGGREGSVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDVARAIKQKLVNNNSAVLSGATPAYDGRKNLYSPVEFQNDKLEFYISLPIPTSKLNSPYGEMPDLKEKHEQLKLFRINVKLVSKINGKELSNYLSNEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIAYLQKRVEFLRDLSQRKTAQLTGEERKEVEKALKSIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNLRLVNYFKDQYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPAERKTIVEGVMRGTVGPTSGDQEKEFKLQVSREMTKLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSNVPRFINQLCQRCEQLGIFLNKNTVISPQFESIQILNNVTLLESKLKRIQRTASNNLQLLICIMERKHKGYADLKRIAETSVGVMSQCCLYPNLNKLSSQFLANLVLKINAKVGGCTVALYNSLPSQLPRLFHIDEPVIFMGADVTHPHPLDDVSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFYKVLEEELQSIRFACSRFPGYKPTITFAVVQKRHHTRLFPFETDQSSTQNNFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSTSTLSRAAPPKTAALPKLSENIKKLMFYC 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00487 1029 SMART PAZ_2_a_3 392 523 IPR003100 GO:0005515
Gma01g00487 1029 Pfam PAZ domain 396 517 IPR003100 GO:0005515
Gma01g00487 1029 SUPERFAMILY Ribonuclease H-like 665 990 IPR012337 -
Gma01g00487 1029 Pfam Argonaute linker 1 domain 333 382 IPR014811 -
Gma01g00487 1029 CDD PAZ_argonaute_like 395 500 - -
Gma01g00487 1029 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 115 1028 - -
Gma01g00487 1029 Pfam Piwi domain 681 987 IPR003165 GO:0003676
Gma01g00487 1029 PANTHER PROTEIN ARGONAUTE 7 115 1028 - -
Gma01g00487 1029 MobiDBLite consensus disorder prediction 28 52 - -
Gma01g00487 1029 SMART Piwi_a_2 680 990 IPR003165 GO:0003676
Gma01g00487 1029 CDD Piwi_ago-like 549 989 IPR045246 -
Gma01g00487 1029 MobiDBLite consensus disorder prediction 110 128 - -
Gma01g00487 1029 SUPERFAMILY PAZ domain 379 537 IPR036085 GO:0005515
Gma01g00487 1029 SMART DUF1785_2 332 384 IPR014811 -
Gma01g00487 1029 MobiDBLite consensus disorder prediction 22 53 - -
Gma01g00487 1029 ProSiteProfiles Piwi domain profile. 680 990 IPR003165 GO:0003676
Gma01g00487 1029 Gene3D paz domain 378 505 - -
Gma01g00487 1029 Gene3D - 752 1029 IPR036397 GO:0003676
Gma01g00487 1029 MobiDBLite consensus disorder prediction 96 128 - -
Gma01g00487 1029 Pfam N-terminal domain of argonaute 177 323 IPR032474 -
Gma01g00487 1029 Gene3D - 566 742 - -
Gma01g00487 1029 ProSiteProfiles PAZ domain profile. 392 501 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00487 Gma-Chr1 6732864 6737810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00487 171 1029 Eukaryotic Initiation Factors Gene Family AT1G48410 41.518 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00487 K11593 - gmx:100796107 2001.48