Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00481 ATGAGCAGCGGCGGCGGATCGTCAGAGGCGGCGGCGGCGGCGAAGGAGAAGGAGAAGGAGAAGGCGCGTGTGAGTCGAACGTCGCTGATTCTGTGGCACGCGCACCAAGACGACGCCGCAGCGGTGAGGAAGCTTCTGGAGGAGGATCCATCGCTGGTGAAGGCGAGGGATTACGACAGCCGGACGCCGCTACATGTGGCGTCGCTCCATGGATGGGTTGAGGTTGCGAATTGCTTGATCGAATTCGGTGCTGAcGTCAACGCTCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAAGGAGCTAAAAGAACTGCCATGATTGAGCTTTTGAAGTCACATGGTGGCTTGTCGTATGGCCAGAATGGAAGCCATTTTGAACCGAGTCCTGTTCTTCCCCCATTGCCTAACAAATGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCCAATTCAGTTTGCATTGGAAAGGGATCTTTTGGTGAGATTTTGAAAGCCCATTGGCGTGGAACACCTGTTGCTGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTCATTCAGGACTTCAGGCAGGAGGTTAATTTACTTGTGAAGCTTCGACACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACTGACAGAAAGCCTCTTATGTTAATTACTGAGTATCTGAGAGGAGGTGATCTTCATAAGTACCTCAAGGACAAAGGTGCACTTAGTCCTTCAACAGCCATCAATTTTGGCTTGGATATTGCTAGAGGGATGGCTTATCTTCACAATGAACCAAATGTTATCATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAACTCCAGTGCTGACCATTTAAAAGTTGGTGATTTTGGACTTAGTAAGCTCATTAAGGTCCAAAGTGCTCATGACGTATACAAGATGACGGGTGAAACTGGAAGCTACCGCTACATGGCTCCTGAAGTTCTCAAACACCGGAGATATGATAAGAAGGTTGATGTGTTCTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGTGAACCCCCTTTTTCAAATTACGAACCTTATGATGGAGCCAAATATGTGGCAGAAGGACACAGACCTTCTTTTAGGGGAAAGGGTTATATCCCTGAACTGCGAGAGTTAACTGAGCAGTGTTGGGATGCTGACATGAAGCAAAGACCTTCATTCATAGAGATCATTAAACACCTTGAAAAGATCAAGGAAAATTTGCCTTCAGATCATCACTGGCACTTGTTCACTTCATGA 1284 0.465 MSSGGGSSEAAAAAKEKEKEKARVSRTSLILWHAHQDDAAAVRKLLEEDPSLVKARDYDSRTPLHVASLHGWVEVANCLIEFGADVNAQDRWKNTPLADAEGAKRTAMIELLKSHGGLSYGQNGSHFEPSPVLPPLPNKCDWEVDPSELDFSNSVCIGKGSFGEILKAHWRGTPVAVKRILPSLSDDRLVIQDFRQEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHKYLKDKGALSPSTAINFGLDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVQSAHDVYKMTGETGSYRYMAPEVLKHRRYDKKVDVFSFAMILYEMLEGEPPFSNYEPYDGAKYVAEGHRPSFRGKGYIPELRELTEQCWDADMKQRPSFIEIIKHLEKIKENLPSDHHWHLFTS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00481 427 ProSiteProfiles Protein kinase domain profile. 151 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00481 427 SMART serkin_6 151 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00481 427 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 11 419 - -
Gma01g00481 427 SUPERFAMILY Protein kinase-like (PK-like) 150 422 IPR011009 -
Gma01g00481 427 ProSitePatterns Protein kinases ATP-binding region signature. 157 178 IPR017441 GO:0005524
Gma01g00481 427 Gene3D Phosphorylase Kinase; domain 1 143 230 - -
Gma01g00481 427 CDD STKc_MAP3K-like 157 409 - -
Gma01g00481 427 PIRSF ILK 1 427 - -
Gma01g00481 427 Gene3D - 4 126 IPR036770 -
Gma01g00481 427 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 419 - -
Gma01g00481 427 SMART ANK_2a 59 88 IPR002110 GO:0005515
Gma01g00481 427 MobiDBLite consensus disorder prediction 1 23 - -
Gma01g00481 427 Pfam Protein tyrosine and serine/threonine kinase 156 409 IPR001245 GO:0004672|GO:0006468
Gma01g00481 427 ProSiteProfiles Ankyrin repeat region circular profile. 59 91 - -
Gma01g00481 427 SUPERFAMILY Ankyrin repeat 30 117 IPR036770 -
Gma01g00481 427 ProSiteProfiles Ankyrin repeat profile. 59 91 IPR002110 GO:0005515
Gma01g00481 427 Gene3D Transferase(Phosphotransferase) domain 1 231 423 - -
Gma01g00481 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Gma01g00481 427 PRINTS Tyrosine kinase catalytic domain signature 226 239 IPR001245 GO:0004672|GO:0006468
Gma01g00481 427 PRINTS Tyrosine kinase catalytic domain signature 264 282 IPR001245 GO:0004672|GO:0006468
Gma01g00481 427 PRINTS Tyrosine kinase catalytic domain signature 380 402 IPR001245 GO:0004672|GO:0006468
Gma01g00481 427 Pfam Ankyrin repeats (many copies) 45 97 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00481 Gma-Chr1 6539042 6548783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00481 2 427 MAP Kinase Kinase Kinase AT1G14000 81.713 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Gma01g00481 PK_Tyr_Ser-Thr 3.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00481 - - gmx:100789273 842.802