Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00472 ATGGGAAGGATGCCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCCGAAGAAGATAAGAAGCTTGTTGCTTATGTTGAAAAGCACGACCACGGAAACTGGCATTCAGTGCCTGCCAAAGCGGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGGTGGATCAATTACCTCAAGCCAGATATAAAAAGAGGAAACTTCAGCATGGAGGAAGACCGTACCATTATTCAACTTCATGCTCTTCTTGGAAACAAttgccattgTTCTAATTTGTATGTTTCTATTTGCAAGCACAAATGGTCAATCATAACAGCTCACTTGCCCAATAGAACAGACAATGAGATCAAGAACTACTGGAACACCAATGTCAAGAAAAGATTCATAAGAATGAGCTTAGATCCCATTACTCACAAACCAATGAAATCCAACACGTTTGAGGCCCATGATGAGTTCAAGGACATCACAAATATTGGCCACGTTTCTCAATGGGAGAGTGCTCGACTCGAAGCTGAAGCAAGAGGATCTATGTTGCAAGTGGGGTCTGGATCCTTACATCTCCCTAGGTTAATCTTAAGCAAAATTCCAACTCAACCTTGTCCTTCATCAAATTTGCTATCGACTGAACATAAGCGAGTGTATAACATGTATGCTCTCGTGCTTGCAACGAATCATGACCTTCAATCATCAGTATCTACTTTGAGC 711 0.4177 MGRMPCCEKVGLKKGPWTPEEDKKLVAYVEKHDHGNWHSVPAKAGLQRCGKSCRLRWINYLKPDIKRGNFSMEEDRTIIQLHALLGNNCHCSNLYVSICKHKWSIITAHLPNRTDNEIKNYWNTNVKKRFIRMSLDPITHKPMKSNTFEAHDEFKDITNIGHVSQWESARLEAEARGSMLQVGSGSLHLPRLILSKIPTQPCPSSNLLSTEHKRVYNMYALVLATNHDLQSSVSTLS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00472 237 SUPERFAMILY Homeodomain-like 11 122 IPR009057 -
Gma01g00472 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma01g00472 237 CDD SANT 16 61 IPR001005 -
Gma01g00472 237 Pfam Myb-like DNA-binding domain 67 124 IPR001005 -
Gma01g00472 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma01g00472 237 PANTHER TRANSCRIPTION FACTOR MYB106 1 190 - -
Gma01g00472 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 130 IPR017930 -
Gma01g00472 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma01g00472 237 SMART sant 13 63 IPR001005 -
Gma01g00472 237 SMART sant 66 128 IPR001005 -
Gma01g00472 237 CDD SANT 69 126 IPR001005 -
Gma01g00472 237 Gene3D - 13 66 - -
Gma01g00472 237 Gene3D - 69 129 - -
Gma01g00472 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 190 - -
Gma01g00472 237 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00472 Gma-Chr1 6220273 6221329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00472 1 201 MYB Transcription Factor Family AT5G15310 57.711 2.94e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g00472 Myb_DNA-binding 5.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00472 K09422 - gmx:100785734 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00472 01 6220273 6221329 Gma02g01007 02 10844703 10845311 GST