Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00461 ATGATTATTATTATTGTTAATTTTTTTTCAGGAAAAATGGCTCAAGTTTGTTTGCTCTTGGTGGGGCTTCTCACAATGTTCTCCTCTGCCTATGGCTATGGATATGGTGGTGGCTGGGTTAATGCACATGCCACCTTCTATGGAGGAAGTGATGCCTCAGGAACAATGGGTGGGGCATGTGGATATGGCAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGTCTTAGTTGTGGCTCATGCTATGAAATAAGGTGTGTGAATGACCATAGGTGGTGCCTCCCTGGCTCCATTATGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCAAACAATGCAGGAGGATGGTGCAACCCTCCTATGCACCATTTTGACCTCTCTCAGCCTGTCTTCCTTCGCATTGCACAATACAGAGCAGGAATTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCCTACTTTAACTTGGTCCTCATAACAAACGTAGGAGGTGCTGGAGATGTTCATGGTGTGGCCATCAAAGGGTCAAGAACTGGGTGGATGCCAATGTCCAGAAACTGGGGTCAAAATTGGCAAAGCAACAACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACCACTAGTGATGGCCGTACAGTGGTGTCCTACAATGTTGCCCCTGCTGGTTGGTCCTTCGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 789 0.4804 MIIIIVNFFSGKMAQVCLLLVGLLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPMHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTYTGAQFR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00461 262 PANTHER EXPANSIN 17 261 - -
Gma01g00461 262 SUPERFAMILY Barwin-like endoglucanases 38 187 IPR036908 -
Gma01g00461 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Gma01g00461 262 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Gma01g00461 262 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Gma01g00461 262 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Gma01g00461 262 Gene3D - 28 165 IPR036908 -
Gma01g00461 262 PANTHER EXPANSIN-A15 17 261 IPR002963 GO:0009664
Gma01g00461 262 Gene3D - 169 261 IPR036749 -
Gma01g00461 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 169 IPR007112 -
Gma01g00461 262 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Gma01g00461 262 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Gma01g00461 262 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Gma01g00461 262 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Gma01g00461 262 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Gma01g00461 262 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Gma01g00461 262 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Gma01g00461 262 Pfam Lytic transglycolase 74 159 IPR009009 -
Gma01g00461 262 SMART dpbb_1 74 159 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00461 Gma-Chr1 5991245 5993454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00461 8 262 Expansin Gene Family AT2G03090 80.784 1.43e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00461 - - gmx:100796316 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00461 01 5991245 5993454 Gma01g00461 01 5991245 5993454 ECH
Gma01g00461 01 5991245 5993454 Gma06g01752 06 17836215 17838699 ECH
Gma01g00461 01 5991245 5993454 Gma04g01631 04 44363370 44366477 ECH
Gma01g00461 01 5991245 5993454 Gma17g00953 17 8120474 8123768 ECH
Gma01g00461 01 5991245 5993454 Gma19g00216 19 2784944 2787319 ECH
Gma01g00461 01 5991245 5993454 Gma20g00327 20 4783736 4785890 ECH
Gma01g00461 01 5991245 5993454 Gma02g00998 02 10683705 10686005 GST