Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00448 ATGGCTTCAGAGACAGAGGTGTTAAATATTATTTCCTCTGTTTTCGAACGCTTCGAGAGAAACATGTCTCTGTTTCTGCCCTTCATCTTCGGCTTCTCTGACGCCACCTCAGGACGAGATAGCGACGACCCAGATCACGAAACTGCTCACACAGAAGGTTCACTGCGTCAAAGAATAATCTTGGTGAACCCCTTGACTCAGGGCATGGTGGTGATCGACGGCGGTTTGAGCCTCGAAGCTCTGTTTCGCGAACTCGCCAACGGGAAAGGTGGTCGACCACCGGCTTCTAAGGAGTCCATTGAGGCCTTGCCAAGTGTGGAAATTGGAGAAGATAATGAGGATTTGGAGTGTGTAGTTTGTTTGGAGGAGTTTGGGGTTGGTGGGGTGGCAAAGGAGATGCCTTGTAAGCATAGGTTTCATGTCAATTGCATTGAGAAGTGGTTGGGGATGCATGGGTCTTGTCCTGTGTGTAGGTATGAGATGCCTGTGGAGGAGATTGATTGGGGGAAGAAGAGGGAAGAGGAAGTGGGAGAGAGGAGAAGTGGTGGTGGTGGTGAAGTTTGGGTTAGTTTTCCTTTTAATAGGAGTAGTAGGAGAGGCCAAGATCTTGATCAAGCTCAAGCTGTTGCTGGTGATTCAAATGATGATGATTCTTCATCAACTCATGGAGGTGCTGCTGAGGAGAGTTAG 690 0.487 MASETEVLNIISSVFERFERNMSLFLPFIFGFSDATSGRDSDDPDHETAHTEGSLRQRIILVNPLTQGMVVIDGGLSLEALFRELANGKGGRPPASKESIEALPSVEIGEDNEDLECVVCLEEFGVGGVAKEMPCKHRFHVNCIEKWLGMHGSCPVCRYEMPVEEIDWGKKREEEVGERRSGGGGEVWVSFPFNRSSRRGQDLDQAQAVAGDSNDDDSSSTHGGAAEES 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00448 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
Gma01g00448 229 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 11 196 - -
Gma01g00448 229 MobiDBLite consensus disorder prediction 196 220 - -
Gma01g00448 229 Pfam Ring finger domain 116 158 IPR001841 -
Gma01g00448 229 CDD RING-H2_PA-TM-RING 116 158 - -
Gma01g00448 229 SUPERFAMILY RING/U-box 111 163 - -
Gma01g00448 229 SMART ring_2 117 157 IPR001841 -
Gma01g00448 229 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Gma01g00448 229 MobiDBLite consensus disorder prediction 196 229 - -
Gma01g00448 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00448 Gma-Chr1 5781221 5782212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00448 4 198 C3H Transcription Factor Family AT1G26800 52.525 1.15e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00448 - - gmx:100819587 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00448 01 5781221 5782212 Gma01g00448 01 5781221 5782212 ECH
Gma01g00448 01 5781221 5782212 Gma02g00991 02 10572732 10573986 GST