Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00420 ATGAACGTGGATCTGGAATCATTGGCAGAGGCAACTTCTGGGGCCATAGGATCACTGATCAGCACCACTATTCTCTACCCACTTGACACCTGCAAGACCAAGTACCAGGCTGAGGCTCGTTCCTCAGGTCGAATAAAATACAGGAATCTCACTGATGTATTATTGGAGGCAATATCTAACCGTCAGGTGCTTTCACTTTACCAGGGCCTTGGAACAAAGAATCTTCAATCCTTCATTTCACAATTTGTCTACTTCTATGGATACAGCTATTTTAAAAGGCTGTATCTAGAAAAAAGCGGTTATAAATCCATTGGAACAAAAGCAAACTTGGTTATTGCTGCTGCTGCTGGGGCTTGCACAGCCATTGCGACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAGACAAGTGAATTTGGAAAGTCTAAAGGGCTACTGAAGACCCTTACAGAAGGAACCTGGAGTGATGCATTTGATGGCCTCGGTATTTCCTTGCTGCTGACATCAAACCCTGCAATTCAGTATACGGTGTTTGATCAGCTGAAGCAACGAGCACTGAAGAATAAACAAAACAATGCTGATAAAGGAACATCTCCAGCATCCCTTTCCGCATTTATGGCCTTTCTTTTAGGTGCAATTTCAAAGAGCATTGCTACCTGTCTAACATATCCAGCTATCAGGTGCAAAGTTATCATTCAAGCTGCAGACTCGGCTGAACCAACCTCCAAAACAATGATAAAATCACAGAAAACAGTGTCTAGTGTTCTCTATGGAATATGGAAAAGGGAGGGCTTACTGGGATATTTCAAAGGATTGCATGCTCAGATCTTAAAAACTGTTTTGAGCTCAGCACTGCTCTTAATGATCAAGGAAAAGATCTCTGCTACTACCTGGGTGCTTATCCTTGCACTTAAAAGTTTTACGGTTGCTTCACGAAGCCACTGTTGCCACCGAAGCACCCATCTGAATCTTGATGTCAGCAGCATTCGACAAGTCCCTGATCATCAGGAGGTGTTTGCGGACCCGAGCCGTGATGAAAGCTTGATCTTTGAGCTTTTAGAATTCAAGCCTGATGTTGCTGATAATGGGAGTGCTGGGTGGTTTCTTCAAGACCTTGCTAGTGAACAGGATGCTGAAGGAAGTGTGGTTATTGAGCAGTCAGGAGTTCTTGAAGCACCTGGTTTGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATGGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAGTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTCTCTGCATATGAGCCCATTGTTATAAACCCTTTGAGTGAAAGTGCAGACACAGTTGGTGCTGGTGTAGCTGTTCCAGCTGCTCAAGCCGGATGCATGCCCATGGATGAGGTCTTTAAACTTGCTGTTACAAGCTTCAGGGTTCATGACTGGGGTCTTTTTTGA 1494 0.4411 MNVDLESLAEATSGAIGSLISTTILYPLDTCKTKYQAEARSSGRIKYRNLTDVLLEAISNRQVLSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLEKSGYKSIGTKANLVIAAAAGACTAIATQPLDTASSRMQTSEFGKSKGLLKTLTEGTWSDAFDGLGISLLLTSNPAIQYTVFDQLKQRALKNKQNNADKGTSPASLSAFMAFLLGAISKSIATCLTYPAIRCKVIIQAADSAEPTSKTMIKSQKTVSSVLYGIWKREGLLGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILALKSFTVASRSHCCHRSTHLNLDVSSIRQVPDHQEVFADPSRDESLIFELLEFKPDVADNGSAGWFLQDLASEQDAEGSVVIEQSGVLEAPGLMYNNTPAVVTTAVGQMAISKGRQGREAQNIVKVYLANLRLRGVDTDVLVSAYEPIVINPLSESADTVGAGVAVPAAQAGCMPMDEVFKLAVTSFRVHDWGLF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00420 497 Pfam Mitochondrial carrier protein 202 294 IPR018108 -
Gma01g00420 497 Pfam Mitochondrial carrier protein 104 188 IPR018108 -
Gma01g00420 497 Pfam Mitochondrial carrier protein 6 98 IPR018108 -
Gma01g00420 497 Gene3D Mitochondrial carrier domain 4 297 IPR023395 -
Gma01g00420 497 PRINTS Mitochondrial carrier protein signature 113 135 IPR002067 GO:0055085
Gma01g00420 497 PRINTS Mitochondrial carrier protein signature 20 38 IPR002067 GO:0055085
Gma01g00420 497 PRINTS Mitochondrial carrier protein signature 67 85 IPR002067 GO:0055085
Gma01g00420 497 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Gma01g00420 497 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
Gma01g00420 497 SUPERFAMILY Mog1p/PsbP-like 324 497 IPR016123 -
Gma01g00420 497 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 321 497 - -
Gma01g00420 497 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 313 IPR045900 GO:0005347|GO:0006635|GO:0015217
Gma01g00420 497 SUPERFAMILY Mitochondrial carrier 7 292 IPR023395 -
Gma01g00420 497 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 296 IPR018108 -
Gma01g00420 497 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 1 313 - -
Gma01g00420 497 Pfam Ran-interacting Mog1 protein 324 449 IPR007681 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00420 Gma-Chr1 5360191 5375920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00420 23 291 Chloroplast and Mitochondria Gene Families AT1G25380 27.875 3.39e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00420 - - gmx:100787682 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00420 01 5360191 5375920 Gma01g00420 01 5360191 5375920 ECH
Gma01g00420 01 5360191 5375920 Gma02g00970 02 10343257 10353486 GST