Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00418 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAAGCAGGCCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACCGAACAACCTTGTTCCACCACCAGCGTGGTAACTACTGCTGCTGCTACTATTACTTCTGGTAACAACGACCTCCACGTGGCGGAGCAGTCGAAGAAGCCTCCGCCAAAGCGGAGTTCCACGAAAGACCGCCACACGAAGGTCGATGGGCGAGGCCGCCGGATTCGCATGCCAGCGGCCTGCGCCGCAAGAGTGTTCCAACTCACGCGTGAGCTGGGACATAAGTCTGATGGTGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCGGCGGTCATCGCTGCCACAGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTTAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCTTCTCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACCTCAGCCGCCGCTGCTTCCGCGGCGGCGGTGGCACAGCTAAGGAGCCGCGCGGAGTGGGACCGGAACATGAGCATGGTGATGGAGGATTCTCGTAGGAGCATGCTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACGTCAATGTAATTCAACAAGCGAAACAAGAGCTTCGAGAAGAATCCGCCGCCGCCGGTGGCGGCGGCAGTCTTGATTCGGTGGCTTCGGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAGCTATCACAAATGGGAAGCTACTTGATACAATCAAGCACAGGGTCGCTTCCGTCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCCGGTCACGGCAACCAAGCCATGAGTGGTGGTGGTGGCAGCGATGGTAGCAGCGATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGCGGTGTGTATAGAGGAGCTATGTCTGCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGAACCTTATCCCCGGAGCTCAACTAGGTTCCGCCATGGTTGGGGGCGGAAGTGGTGGCGGCAACAGTGGTTCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGGCAGATTCCGGCTAACGGCGTCTCGGAGTCTCCGGCCAGCGCCGGGCAACCTCACGGCGGAGACGATGGACGTGATTCCTCCGGTCAACATTCCTGA 1263 0.5653 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTTSVVTTAAATITSGNNDLHVAEQSKKPPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSAAAASAAAVAQLRSRAEWDRNMSMVMEDSRRSMLENTSSISAILNFNPMGNVNVIQQAKQELREESAAAGGGGSLDSVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQAMSGGGGSDGSSDNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMNLIPGAQLGSAMVGGGSGGGNSGSQLLSESNLGMLAALNAYRQIPANGVSESPASAGQPHGGDDGRDSSGQHS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00418 420 MobiDBLite consensus disorder prediction 394 420 - -
Gma01g00418 420 MobiDBLite consensus disorder prediction 60 81 - -
Gma01g00418 420 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Gma01g00418 420 MobiDBLite consensus disorder prediction 232 266 - -
Gma01g00418 420 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 4 420 - -
Gma01g00418 420 MobiDBLite consensus disorder prediction 51 81 - -
Gma01g00418 420 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 420 IPR005333 GO:0003700
Gma01g00418 420 Pfam TCP family transcription factor 70 228 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00418 Gma-Chr1 5321213 5322475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00418 15 354 TCP Transcription Factor Family AT3G47620 38.038 3.77e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma01g00418 TCP 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00418 - - gmx:100809966 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00418 01 5321213 5322475 Gma01g00418 01 5321213 5322475 ECH
Gma01g00418 01 5321213 5322475 Gma02g00969 02 10320039 10322002 GST
Gma01g00418 01 5321213 5322475 Gma17g00934 17 7975100 7976561 PCT
Gma01g00418 01 5321213 5322475 Gma05g00267 05 2431464 2433175 PCT