Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00412 ATGTGGATCCGAGGATTCAGTTTTTGGATCAAAGGTTGCTTTTTGCTGGCCTTGGTATCTATAATTTCCGGTCTGGAACCCGAACTAGGATTTACCCGCGTCGTCTTTCAGACAAAGTATGGAGATATTGAATTTGGTTTCTATCCAACCGTGGCATCCAAAACTGTTGACCACATTTTTAAGCTTGTGCGACTTGGAGGCTATAACACGAACCATTTCTTTCGGGTGGATAAGGGATTCGTGGCCCAAGTAGCAGATGTTGCAAATGAAAGATCGACTCCAGTGAACGAGGAACAAAGAAGGGAAGCTGTAAAGACTGTTGTTGGTGAATTTAGTGAAGTCAAACATGTTCGGGGTATTCTTTCCATGGGAAGATATGATGATCCGGACAGTGCTTCATCTTCATTTTCAATACTACTTGGAGATGCCCCTCATCTTGATGGCAAGTATGCAATATTTGGAAAAGTTACTAAAGGCGATGAAATGTTGACAAAGCTCGAGAATATTTCAGGGAAAAAGGGCACATATCAAGTTAGAATTCATGTTTATTGTGAGAAAATGAGAACTATAAATTTGGCTCATAGTGTATCCAACCATATATGGATGCCGATGGAATGCATCACTATCCTGTCATCATATTACTATGACACGGAGACAGAAAATTGTGAGCAAGACAGATCAATTTTGAAGCTTAGACCAGCTGCCTCAGCTGTTGAAGTTGAAAGACAGAGGATGAAATGCTTCCCCTGA 750 0.4107 MWIRGFSFWIKGCFLLALVSIISGLEPELGFTRVVFQTKYGDIEFGFYPTVASKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVANERSTPVNEEQRREAVKTVVGEFSEVKHVRGILSMGRYDDPDSASSSFSILLGDAPHLDGKYAIFGKVTKGDEMLTKLENISGKKGTYQVRIHVYCEKMRTINLAHSVSNHIWMPMECITILSSYYYDTETENCEQDRSILKLRPAASAVEVERQRMKCFP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00412 249 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 16 174 - -
Gma01g00412 249 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 16 174 IPR044233 -
Gma01g00412 249 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 202 249 IPR044233 -
Gma01g00412 249 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 180 IPR002130 GO:0000413|GO:0003755
Gma01g00412 249 Gene3D - 25 190 IPR029000 -
Gma01g00412 249 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 202 249 - -
Gma01g00412 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Gma01g00412 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Gma01g00412 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Gma01g00412 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Gma01g00412 249 SUPERFAMILY Cyclophilin-like 33 184 IPR029000 -
Gma01g00412 249 CDD cyclophilin 35 169 - -
Gma01g00412 249 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 30 214 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00412 Gma-Chr1 5107468 5112097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00412 34 169 U-box Gene Family AT5G67530 29.286 1.10e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00412 - - gmx:100819238 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00412 01 5107468 5112097 Gma01g00412 01 5107468 5112097 ECH
Gma01g00412 01 5107468 5112097 Gma02g00964 02 10227339 10239169 GST