Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00411 ATGTCTAGCAGAAGATCTCGTTCTAGACAATCCGGTGCTTCCGCTGAGATCACAGATGCTCAAATCACCGATCTCGTTTCGAAGTTACAACAACTTATCCCTGAGCTTCGTGCTAGGCGCTCCGACAAGGTTTCATCTGCTAAGGTATTGCAGGAGACATGCAACTACATAAAGAACTTGCACAGAGAGGTTGATGATCTAAGTGACCGATTATCGGAGCTTTTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATTCACTTTGCTGGATTTGGGGCAAAGGCAACGACGAAAAATTGGGCTTCGTTGTGTCGAATTGGAGTTGCAAAATATGAATCTTTGTGTTTCAAATTGCAAAGTTTGAACCGGTCTCAGCAAAACAATCCCTAA 411 0.438 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSSAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLIHFAGFGAKATTKNWASLCRIGVAKYESLCFKLQSLNRSQQNNP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00411 136 Coils Coil 57 77 - -
Gma01g00411 136 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Gma01g00411 136 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Gma01g00411 136 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gma01g00411 136 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Gma01g00411 136 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gma01g00411 136 Gene3D - 20 89 IPR036638 GO:0046983
Gma01g00411 136 CDD bHLH_AtPRE_like 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00411 Gma-Chr1 5058729 5063583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00411 1 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 67.368 8.36e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma01g00411 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00411 - - gmx:100816720 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00411 01 5058729 5063583 Gma01g00411 01 5058729 5063583 ECH
Gma01g00411 01 5058729 5063583 Gma06g01712 06 17282371 17284398 ECH
Gma01g00411 01 5058729 5063583 Gma04g01671 04 45393776 45395428 ECH
Gma01g00411 01 5058729 5063583 Gma19g00188 19 2306892 2310132 ECH