Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00407 ATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACTCCTCACCATGATGATCATCATCATCAACCTCCACCATCCCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGTCAATGCCGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGGAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGGAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAAATATTGGCACTGAAAAGTAGAGAACCAACTGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAAAGCAGACCCCTCTTTCCTCCTTCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACCTCTTCAAGACCAGACCTTCCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCGGGGTTTTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 852 0.4484 MAFFPANFMLQTPHHDDHHHQPPPSLTSILPTCAPQEYHGGVTFLGKRSMSFSSGIEHGEEVNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPHSTHQQSRPLFPPSSARPAGVAQLFQTSSRPDLPSCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00407 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 283 IPR045224 GO:0003700
Gma01g00407 283 MobiDBLite consensus disorder prediction 181 224 - -
Gma01g00407 283 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Gma01g00407 283 Pfam Homeodomain 78 131 IPR001356 GO:0003677
Gma01g00407 283 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677
Gma01g00407 283 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677
Gma01g00407 283 Gene3D - 70 139 - -
Gma01g00407 283 CDD homeodomain 78 134 IPR001356 GO:0003677
Gma01g00407 283 Coils Coil 125 173 - -
Gma01g00407 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 283 - -
Gma01g00407 283 SUPERFAMILY Homeodomain-like 68 135 IPR009057 -
Gma01g00407 283 MobiDBLite consensus disorder prediction 178 231 - -
Gma01g00407 283 MobiDBLite consensus disorder prediction 60 82 - -
Gma01g00407 283 Pfam Homeobox associated leucine zipper 133 173 IPR003106 GO:0006355|GO:0043565
Gma01g00407 283 SMART HOX_1 76 137 IPR001356 GO:0003677
Gma01g00407 283 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00407 Gma-Chr1 5000645 5002260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00407 1 283 Homeobox Transcription Factor Family AT1G69780 63.973 2.20e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma01g00407 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00407 K09338 - gmx:100814080 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00407 01 5000645 5002260 Gma01g00407 01 5000645 5002260 ECH
Gma01g00407 01 5000645 5002260 Gma18g01137 18 16747812 16749613 PCT