Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00404 ATGCAAGATATCAAGAAGCAGCAGGATAAGCAGAAGAAGCAAATGGTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGAGTCAAGAGGAAGATGACATACTGAGGGAGCAGATAGGTGTACATGGAACTGAGAATTGGGCAATTATTGCTTCTAAGTTCAAGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACAAGCTTTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTGTGCAAAAAGAGAGCAAAATATGAAGCATTAGCAAACGAGAACAACACTTCATACATCAATTCAAATAACAAAAGGATTTTTCTCCAGCATGGGTGTGATACAGATGTGGCATCAGAATCTGCTATTAAGAAAATGAGGAGGTCCCATATCTCTGATGCCACTGAGAAGATCAACTTTGGAGACAGATCGCATAAACAAAATGGGATTCTATTAAATCAGCAGTCAAGAGCACCATTTGCAGTTTTAGCTCAAAACTCTCACAATGTCAACTTGCCAGACCAGCATCGTGTCTGCAATTTGAAGTTTAGCGATTATGCTCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAGGATAAACACATTGATGCAACAAGCAGAGTTATTAAGTTCACTAGCTCTAAAAGTTGATGCAGAGAACATGGATCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAATTTCTGAACCGAACCAAAGAGTTAGACATTCCTAGATATAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTATTGGCGGACTTAAAGAGCAGTAGTGAGGAAATCCAGCCATGCTGGAGGCCAGTGGAACTATATGAAGACTCTCCAGGCAGTTCTGAATACAGTACAGGATCAACTCTCATGCCTCATTCAGCTGGTGAGGATTTGGAACATTCACTGCATCAGGACATTGGAACCGAACTGAATATACAAATTGGAGATCCAGAAGGGGTTAGGGGATGTGACCAAGGGATTCTTTCTAGTGCAACTCTGAATCAAGATTTATTCTCATCTTCTGAGGAACAGATAAACAATGATGGCATTGTTTCGGCCTTGTCACGTTCAGAGTTCAGTTCACCTCTTCAAGTTACCCCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAGCTTCCTTATGAAAACACTTGGAATGGAGTCTCCGTCGCTCAATCCAAGTGCCAACCCCTCACAACCGCCACTCTGCAAAAGAGCCCTCCTAATCTGA 1419 0.4101 MQDIKKQQDKQKKQMVNEESKKKERHIVTWSQEEDDILREQIGVHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDKLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALANENNTSYINSNNKRIFLQHGCDTDVASESAIKKMRRSHISDATEKINFGDRSHKQNGILLNQQSRAPFAVLAQNSHNVNLPDQHRVCNLKFSDYAQNNKIQGTFLKKDDPRINTLMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKELDIPRYKIPDLQLVDLKDLLADLKSSSEEIQPCWRPVELYEDSPGSSEYSTGSTLMPHSAGEDLEHSLHQDIGTELNIQIGDPEGVRGCDQGILSSATLNQDLFSSSEEQINNDGIVSALSRSEFSSPLQVTPLFRSLAAGIPSPQFSESERSFLMKTLGMESPSLNPSANPSQPPLCKRALLI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00404 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 73 IPR017930 -
Gma01g00404 472 MobiDBLite consensus disorder prediction 1 25 - -
Gma01g00404 472 Pfam Myb-like DNA-binding domain 30 90 - -
Gma01g00404 472 Coils Coil 1 21 - -
Gma01g00404 472 CDD SANT 29 73 IPR001005 -
Gma01g00404 472 PANTHER MYB PROTEIN-RELATED 10 471 - -
Gma01g00404 472 Gene3D - 16 78 - -
Gma01g00404 472 SUPERFAMILY Homeodomain-like 26 120 IPR009057 -
Gma01g00404 472 PANTHER TRANSCRIPTION FACTOR MYB88 10 471 - -
Gma01g00404 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Gma01g00404 472 Gene3D - 81 150 - -
Gma01g00404 472 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Gma01g00404 472 SMART sant 78 126 IPR001005 -
Gma01g00404 472 SMART sant 26 75 IPR001005 -
Gma01g00404 472 CDD SANT 82 123 IPR001005 -
Gma01g00404 472 ProSiteProfiles Myb-like domain profile. 30 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00404 Gma-Chr1 4955569 4961401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00404 18 323 MYB Transcription Factor Family AT2G02820 63.578 6.46e-136 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma01g00404 Myb_DNA-bind_6 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00404 K09422 - gmx:100803030 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00404 01 4955569 4961401 Gma01g00404 01 4955569 4961401 ECH
Gma18g01109 18 15951931 15957019 Gma01g00404 01 4955569 4961401 PCT