Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00402 ATGGGTAACTGCCTAGATTCTTCTGCCAAGGTTGATGCAGCTCAGAGCTCCAAATCCACTTCTGCATCAGGAATCTCAAAAACTACTCCTTCCAGTTTATCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTTAAGCCCTTCACATTCAATGAGCTAAAGAATGCCACCCGAAATTTTCGGCCCGATAGTCTTCTCGGTGAAGGGGGATTTGGATATGTCTACAAGGGATGGATTGATGAACACACATTTACGGCTTCAAAACCCGGATCAGGAATGGTTGTTGCTGTGAAGAGGCTGAAACCTGAAGGTTTTCAAGGTCACAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTGTACCATCCTAATCTGGTTAAATTAATCGGGTACTGCTTGGAGGGAGAGAACCGGCTATTGGTGTATGAGTTTATGCCTAAAGGGAGCTTAGAGAACCATCTATTTAGAAGAGGACCACAACCGCTGTCTTGGTCGGTGAGGATGAAAGTGGCTATTGGTGCTGCCAGAGGACTCTCCTTTCTTCATAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCTTCTAACATCCTGCTGGATGCTGAGTTTAATTCGAAACTTTCTGACTTTGGTTTAGCTAAGGCGGGTCCTACTGGCGATAGAACTCATGTGTCCACTCAAGTAATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGTttgacggccaaaagtgatgtctacagctttggagttgtGTTGCTTGAACTTCTATCCGGAAGACGCGCTGTTGATAAAACCATAACCGGCATGGAGCAGAATCTGGTGGACTGGGCAAAACCATATTTGAGCGATAAACGAAGACTGTTCCGGATTATGGATACCAAGTTGGAGGGCCAGTACCCACAAAAGGGGGCCTTCACGGCTGCCACACTTGCTCTACAATGCCTTAACAGTGAGGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGCAACTCTGGAACAGATAGAGGCCCCCAAAACTGCAGGCAGAAACTCCCATTCAGAACACCATAGAGTTCAGACTCCTGTGAGAAAGTCTCCTGCACGAAACCGGTCACCGTTAAATCTAACTCCTACTGCGTCCCCTCTCCCAGCTCACCGGCAATCGCCTCGTGTTCACTAA 1236 0.4539 MGNCLDSSAKVDAAQSSKSTSASGISKTTPSSLSIPSYSEKSNASSLPTPRSEGEILSSPNLKPFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLYHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTITGMEQNLVDWAKPYLSDKRRLFRIMDTKLEGQYPQKGAFTAATLALQCLNSEAKARPPMTEVLATLEQIEAPKTAGRNSHSEHHRVQTPVRKSPARNRSPLNLTPTASPLPAHRQSPRVH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00402 411 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Gma01g00402 411 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Gma01g00402 411 MobiDBLite consensus disorder prediction 362 411 - -
Gma01g00402 411 Gene3D Transferase(Phosphotransferase) domain 1 163 384 - -
Gma01g00402 411 MobiDBLite consensus disorder prediction 1 60 - -
Gma01g00402 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Gma01g00402 411 CDD STKc_IRAK 83 360 - -
Gma01g00402 411 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
Gma01g00402 411 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 18 409 - -
Gma01g00402 411 MobiDBLite consensus disorder prediction 9 60 - -
Gma01g00402 411 MobiDBLite consensus disorder prediction 383 402 - -
Gma01g00402 411 PANTHER OS01G0588500 PROTEIN-RELATED 18 409 - -
Gma01g00402 411 ProSiteProfiles Protein kinase domain profile. 77 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g00402 411 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00402 Gma-Chr1 4920941 4925833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00402 53 357 Glycoside Hydrolase AT3G07070 52.922 3.46e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma01g00402 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00402 - - gmx:100809778 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00402 01 4920941 4925833 Gma01g00402 01 4920941 4925833 ECH
Gma01g00402 01 4920941 4925833 Gma05g00275 05 2482937 2487228 PCT